ENSG00000196151

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000358147 ENSG00000196151 No_inf pgKDN_inf WDSUB1 protein_coding protein_coding 7.084883 8.213007 7.220632 0.6051816 0.5563883 -0.1855444 1.2754298 0.3457134 2.7597486 0.3457134 0.2778687 2.9609680 0.1836417 0.050725 0.384325 0.333600 0.03083083 0.03083083 FALSE TRUE
ENST00000359774 ENSG00000196151 No_inf pgKDN_inf WDSUB1 protein_coding protein_coding 7.084883 8.213007 7.220632 0.6051816 0.5563883 -0.1855444 4.1952021 4.8297322 3.0621109 0.1675686 0.4689064 -0.6556969 0.6198417 0.601375 0.445625 -0.155750 0.74492708 0.03083083 FALSE TRUE
ENST00000409124 ENSG00000196151 No_inf pgKDN_inf WDSUB1 protein_coding protein_coding 7.084883 8.213007 7.220632 0.6051816 0.5563883 -0.1855444 0.2978349 0.0000000 0.4870860 0.0000000 0.4870860 5.6354236 0.0451500 0.000000 0.063850 0.063850 0.83428937 0.03083083 FALSE TRUE
MSTRG.17128.5 ENSG00000196151 No_inf pgKDN_inf WDSUB1 protein_coding   7.084883 8.213007 7.220632 0.6051816 0.5563883 -0.1855444 1.2867820 2.9486598 0.9116861 1.1044300 0.9116861 -1.6825964 0.1470250 0.334850 0.106225 -0.228625 0.39886547 0.03083083 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000196151 E001 0.3703650 0.017102925 0.811724412   2 159235798 159235800 3 - 0.110 0.151 0.523
ENSG00000196151 E002 0.3703650 0.017102925 0.811724412   2 159235801 159235824 24 - 0.110 0.151 0.523
ENSG00000196151 E003 1.7311594 0.008424787 0.646293554 0.85032070 2 159235825 159235833 9 - 0.388 0.457 0.371
ENSG00000196151 E004 15.0962056 0.001238086 0.182425029 0.45884025 2 159235834 159236190 357 - 1.249 1.161 -0.313
ENSG00000196151 E005 10.6355533 0.001312258 0.252306533 0.54378456 2 159248372 159248512 141 - 0.998 1.094 0.350
ENSG00000196151 E006 11.9843260 0.001447305 0.320530075 0.61344413 2 159256196 159256375 180 - 1.057 1.135 0.283
ENSG00000196151 E007 4.4442933 0.003337869 0.724363536 0.88928162 2 159257758 159257864 107 - 0.703 0.745 0.175
ENSG00000196151 E008 2.2211658 0.008477116 0.807913300 0.92910444 2 159257945 159257985 41 - 0.480 0.516 0.175
ENSG00000196151 E009 2.3774191 0.006631889 0.056359629 0.23673678 2 159259810 159259843 34 - 0.333 0.614 1.429
ENSG00000196151 E010 3.9991343 0.003826111 0.016554231 0.11203864 2 159271702 159271795 94 - 0.480 0.791 1.359
ENSG00000196151 E011 4.6824292 0.003578565 0.961921980 0.99168477 2 159275546 159275638 93 - 0.750 0.745 -0.018
ENSG00000196151 E012 6.3605580 0.002435369 0.127734581 0.37889973 2 159279761 159279945 185 - 0.944 0.791 -0.589
ENSG00000196151 E013 11.7143712 0.001456121 0.008693123 0.07324714 2 159282672 159283093 422 - 1.205 1.005 -0.718
ENSG00000196151 E014 0.1272623 0.012441634 0.752191195   2 159286360 159286427 68 - 0.000 0.082 8.046
ENSG00000196151 E015 0.0000000       2 159286428 159286582 155 -      
ENSG00000196151 E016 2.1065598 0.007326606 0.588635017 0.81751375 2 159286583 159286703 121 - 0.437 0.516 0.397

Help

Please Click HERE to learn more details about the results from DEXseq.