ENSG00000196923

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000355841 ENSG00000196923 No_inf pgKDN_inf PDLIM7 protein_coding protein_coding 187.3639 176.9796 162.0546 2.792089 3.228061 -0.1270958 103.095789 80.15328 102.680223 4.3765913 3.0880965 0.3572855 0.55208333 0.453925 0.634425 0.180500 0.005166555 4.475134e-12 FALSE TRUE
ENST00000504380 ENSG00000196923 No_inf pgKDN_inf PDLIM7 protein_coding retained_intron 187.3639 176.9796 162.0546 2.792089 3.228061 -0.1270958 11.380646 14.50677 5.762783 0.8695022 0.7865361 -1.3303820 0.05965833 0.081850 0.035400 -0.046450 0.065201454 4.475134e-12   FALSE
ENST00000505746 ENSG00000196923 No_inf pgKDN_inf PDLIM7 protein_coding protein_coding_CDS_not_defined 187.3639 176.9796 162.0546 2.792089 3.228061 -0.1270958 6.141256 10.40876 1.091015 0.5809500 0.6299440 -3.2422782 0.03213333 0.058900 0.006725 -0.052175 0.018811031 4.475134e-12   FALSE
ENST00000506537 ENSG00000196923 No_inf pgKDN_inf PDLIM7 protein_coding protein_coding 187.3639 176.9796 162.0546 2.792089 3.228061 -0.1270958 13.686658 16.18669 7.028619 0.8478737 2.4456936 -1.2023351 0.07188333 0.091625 0.044100 -0.047525 0.581776358 4.475134e-12 TRUE FALSE
MSTRG.23984.6 ENSG00000196923 No_inf pgKDN_inf PDLIM7 protein_coding   187.3639 176.9796 162.0546 2.792089 3.228061 -0.1270958 11.643351 17.01920 7.152801 0.9479082 1.0623593 -1.2494152 0.06303333 0.096150 0.044575 -0.051575 0.092222297 4.475134e-12 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000196923 E001 1.4811082 0.0099073553 6.538010e-01 8.546573e-01 5 177483394 177483397 4 - 0.355 0.424 0.388
ENSG00000196923 E002 146.6142968 0.0001257404 2.003293e-01 4.823481e-01 5 177483398 177483694 297 - 2.150 2.183 0.110
ENSG00000196923 E003 83.6808230 0.0017839711 6.890854e-01 8.720729e-01 5 177483695 177483730 36 - 1.918 1.934 0.055
ENSG00000196923 E004 54.7038697 0.0054153298 8.767743e-01 9.582425e-01 5 177483867 177483874 8 - 1.740 1.749 0.032
ENSG00000196923 E005 125.1576777 0.0010514959 7.016845e-03 6.314810e-02 5 177483875 177483982 108 - 2.055 2.135 0.270
ENSG00000196923 E006 146.0907313 0.0004206729 1.688182e-02 1.133455e-01 5 177484070 177484190 121 - 2.132 2.194 0.209
ENSG00000196923 E007 10.5976320 0.0012908516 2.975063e-05 8.598984e-04 5 177484191 177484473 283 - 0.818 1.202 1.420
ENSG00000196923 E008 5.2463016 0.0028278558 3.864362e-04 7.096374e-03 5 177484839 177485014 176 - 0.516 0.945 1.777
ENSG00000196923 E009 8.1222860 0.0016924816 1.064499e-05 3.608592e-04 5 177487897 177488067 171 - 0.658 1.116 1.767
ENSG00000196923 E010 183.5660900 0.0006601976 5.262186e-01 7.786302e-01 5 177488068 177488248 181 - 2.272 2.259 -0.044
ENSG00000196923 E011 158.0371486 0.0001189236 1.799182e-01 4.552229e-01 5 177489393 177489627 235 - 2.182 2.216 0.111
ENSG00000196923 E012 59.2403490 0.0038590282 3.277409e-01 6.203014e-01 5 177489771 177489810 40 - 1.801 1.758 -0.145
ENSG00000196923 E013 52.5817244 0.0005312069 1.118145e-01 3.512262e-01 5 177489811 177489832 22 - 1.761 1.697 -0.219
ENSG00000196923 E014 22.4521819 0.0006141311 2.409827e-05 7.228678e-04 5 177489833 177490031 199 - 1.202 1.475 0.950
ENSG00000196923 E015 11.5366349 0.0160808881 7.760438e-03 6.767203e-02 5 177490032 177490099 68 - 0.934 1.202 0.973
ENSG00000196923 E016 16.9894515 0.0012174012 5.215583e-10 4.696115e-08 5 177490100 177490245 146 - 0.934 1.416 1.723
ENSG00000196923 E017 41.9102072 0.0003505087 2.758891e-05 8.082258e-04 5 177490246 177490593 348 - 1.514 1.713 0.678
ENSG00000196923 E018 66.4975287 0.0004133781 3.402035e-01 6.318994e-01 5 177490870 177490906 37 - 1.846 1.812 -0.114
ENSG00000196923 E019 51.0119200 0.0002838550 1.430007e-01 4.026417e-01 5 177491010 177491024 15 - 1.746 1.686 -0.202
ENSG00000196923 E020 62.0931004 0.0002288971 4.939990e-02 2.191797e-01 5 177491025 177491071 47 - 1.836 1.764 -0.246
ENSG00000196923 E021 40.3624429 0.0003467019 5.308942e-03 5.176866e-02 5 177491072 177491072 1 - 1.680 1.551 -0.439
ENSG00000196923 E022 53.6768468 0.0002761284 3.244672e-03 3.661049e-02 5 177491073 177491095 23 - 1.796 1.678 -0.401
ENSG00000196923 E023 67.9863573 0.0002335740 2.578133e-03 3.081078e-02 5 177491096 177491146 51 - 1.892 1.784 -0.363
ENSG00000196923 E024 14.9491025 0.0112987286 2.433266e-05 7.286826e-04 5 177491147 177491403 257 - 0.959 1.339 1.362
ENSG00000196923 E025 6.6904230 0.0021209337 5.620735e-02 2.364086e-01 5 177491404 177491420 17 - 0.764 0.968 0.784
ENSG00000196923 E026 4.5181572 0.0034564571 8.704496e-05 2.119496e-03 5 177491759 177491806 48 - 0.401 0.908 2.224
ENSG00000196923 E027 91.9934798 0.0001714234 1.217810e-06 5.542730e-05 5 177491807 177491925 119 - 2.041 1.892 -0.502
ENSG00000196923 E028 3.7697409 0.0058266215 2.824296e-01 5.761162e-01 5 177491926 177491976 51 - 0.745 0.610 -0.567
ENSG00000196923 E029 0.8613793 0.0127829664 7.791791e-01 9.149984e-01 5 177491977 177491995 19 - 0.245 0.289 0.317
ENSG00000196923 E030 24.9063915 0.0007910470 8.555556e-05 2.090781e-03 5 177491996 177492404 409 - 1.266 1.508 0.838
ENSG00000196923 E031 39.0054426 0.0003725650 5.871322e-03 5.558432e-02 5 177492405 177492412 8 - 1.666 1.536 -0.442
ENSG00000196923 E032 44.5279644 0.0003289472 1.209033e-02 9.099633e-02 5 177492413 177492435 23 - 1.713 1.603 -0.375
ENSG00000196923 E033 119.6700487 0.0001356581 2.879560e-06 1.163342e-04 5 177492526 177492677 152 - 2.143 2.018 -0.420
ENSG00000196923 E034 0.3720642 0.0166803019 6.287636e-01   5 177492678 177492970 293 - 0.098 0.168 0.902
ENSG00000196923 E035 84.4490429 0.0001942266 1.807314e-02 1.186243e-01 5 177496417 177496523 107 - 1.969 1.894 -0.252
ENSG00000196923 E036 5.8556401 0.0031641219 1.694386e-03 2.245884e-02 5 177496524 177496603 80 - 0.606 0.968 1.447
ENSG00000196923 E037 14.6690448 0.0009164284 4.835640e-05 1.295583e-03 5 177496604 177496892 289 - 0.994 1.315 1.148
ENSG00000196923 E038 43.9243868 0.0059182859 4.441949e-01 7.188744e-01 5 177497528 177497606 79 - 1.673 1.632 -0.138

Help

Please Click HERE to learn more details about the results from DEXseq.