ENSG00000197037

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000334715 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding protein_coding 6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 0.2791176 0.4798812 0.0000000 0.4798812 0.0000000 -5.614360 0.04276667 0.053675 0.000000 -0.053675 0.9107083 0.0471867 FALSE TRUE
ENST00000394150 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding nonsense_mediated_decay 6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 0.8337492 0.0000000 2.1174633 0.0000000 0.9482678 7.732990 0.17411667 0.000000 0.442100 0.442100 0.1231703 0.0471867 FALSE TRUE
ENST00000394152 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding protein_coding 6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 2.7400459 4.7497937 2.1996064 0.4489078 0.7688550 -1.107110 0.41610833 0.593600 0.412125 -0.181475 0.8186446 0.0471867 FALSE TRUE
ENST00000431485 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding protein_coding 6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 0.2510630 0.0000000 0.1629718 0.0000000 0.1629718 4.112465 0.05068333 0.000000 0.026900 0.026900 0.7423753 0.0471867 FALSE FALSE
ENST00000493443 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding protein_coding_CDS_not_defined 6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 0.1462467 0.0000000 0.4387401 0.0000000 0.4387401 5.487808 0.02415000 0.000000 0.072450 0.072450 0.8054944 0.0471867 FALSE TRUE
MSTRG.26572.4 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding   6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 1.0905371 3.2716114 0.0000000 1.6912378 0.0000000 -8.358261 0.09861667 0.295850 0.000000 -0.295850 0.0471867 0.0471867 FALSE FALSE
MSTRG.26572.8 ENSG00000197037 No_inf pgKDN_inf ZSCAN25 protein_coding   6.372892 8.956232 5.175081 1.826199 0.39082 -0.7901352 0.3614920 0.0000000 0.0000000 0.0000000 0.0000000 0.000000 0.07554167 0.000000 0.000000 0.000000   0.0471867 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000197037 E001 0.0000000       7 99616946 99616947 2 +      
ENSG00000197037 E002 0.1186381 0.0118723621 0.368166281   7 99616948 99616952 5 + 0.112 0.000 -10.601
ENSG00000197037 E003 0.1186381 0.0118723621 0.368166281   7 99616953 99616965 13 + 0.112 0.000 -12.739
ENSG00000197037 E004 1.9828837 0.0361909989 0.459646997 0.73131075 7 99616966 99616989 24 + 0.393 0.511 0.607
ENSG00000197037 E005 1.7657497 0.0094204486 0.004493911 0.04599138 7 99616990 99617016 27 + 0.112 0.562 3.170
ENSG00000197037 E006 0.0000000       7 99618135 99618209 75 +      
ENSG00000197037 E007 3.0732976 0.0051864771 0.751258073 0.90194654 7 99618525 99618583 59 + 0.627 0.586 -0.183
ENSG00000197037 E008 2.4223845 0.0059609247 0.030579536 0.16457778 7 99618584 99618651 68 + 0.683 0.385 -1.424
ENSG00000197037 E009 3.0910829 0.0053772783 0.617845991 0.83459706 7 99619048 99619132 85 + 0.562 0.629 0.300
ENSG00000197037 E010 0.0000000       7 99619550 99619560 11 +      
ENSG00000197037 E011 2.3467377 0.0071381109 0.719323858 0.88680749 7 99619561 99619624 64 + 0.486 0.537 0.247
ENSG00000197037 E012 1.8177394 0.0150630556 0.145562702 0.40610415 7 99619625 99619664 40 + 0.562 0.347 -1.115
ENSG00000197037 E013 6.2634163 0.0396908561 0.575169525 0.80976254 7 99619665 99619993 329 + 0.890 0.826 -0.246
ENSG00000197037 E014 0.0000000       7 99619994 99619997 4 +      
ENSG00000197037 E015 0.6181855 0.0161698400 0.967717296 0.99349493 7 99619998 99621060 1063 + 0.201 0.207 0.054
ENSG00000197037 E016 0.4978483 0.0172780635 0.526590002   7 99621061 99621372 312 + 0.112 0.207 1.055
ENSG00000197037 E017 2.7101125 0.0051671551 0.998494900 1.00000000 7 99621373 99621436 64 + 0.562 0.562 0.000
ENSG00000197037 E018 3.9675941 0.1078864218 0.623239515 0.83776334 7 99621437 99621574 138 + 0.627 0.722 0.402
ENSG00000197037 E019 0.8881006 0.0135701512 0.015990621 0.10964795 7 99621575 99622548 974 + 0.000 0.385 13.531
ENSG00000197037 E020 2.9861604 0.0052208678 0.233727375 0.52270443 7 99622549 99622640 92 + 0.486 0.650 0.750
ENSG00000197037 E021 2.8110993 0.0163877673 0.292682365 0.58623429 7 99624057 99624180 124 + 0.656 0.511 -0.656
ENSG00000197037 E022 0.4697151 0.0193572044 0.018188458   7 99624181 99624484 304 + 0.338 0.000 -14.462
ENSG00000197037 E023 43.4447338 0.0005109120 0.263331433 0.55626341 7 99629191 99630657 1467 + 1.663 1.620 -0.144
ENSG00000197037 E024 52.7042756 0.0003774572 0.279002282 0.57219975 7 99630658 99632408 1751 + 1.697 1.734 0.122
ENSG00000197037 E025 0.0000000       7 99669095 99669144 50 +      

Help

Please Click HERE to learn more details about the results from DEXseq.