ENSG00000197136

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000355703 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding protein_coding 37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 3.032170 0.9447589 4.37510433 0.6611878 1.07135471 2.19940273 0.08010000 0.032800 0.125450 0.092650 0.305735048 0.005833325 FALSE  
ENST00000439247 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding retained_intron 37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 7.802791 5.2245775 7.46520862 1.2091742 0.89515157 0.51404074 0.20635000 0.169075 0.214175 0.045100 0.836130396 0.005833325 FALSE  
MSTRG.4956.10 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding   37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 1.288662 2.4292214 0.09894941 0.8059795 0.09894941 -4.48469043 0.03643333 0.076375 0.002825 -0.073550 0.005833325 0.005833325 FALSE  
MSTRG.4956.12 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding   37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 12.717738 12.5135767 9.94462698 1.2383376 0.94768469 -0.33120749 0.34505000 0.405400 0.284300 -0.121100 0.479247734 0.005833325    
MSTRG.4956.2 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding   37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 3.946962 3.3450420 3.49181936 1.2033808 1.29351705 0.06177382 0.10562500 0.105275 0.100475 -0.004800 1.000000000 0.005833325 FALSE  
MSTRG.4956.5 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding   37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 1.099998 1.8587358 0.00000000 1.0731661 0.00000000 -7.54591883 0.03085000 0.060150 0.000000 -0.060150 0.469647786 0.005833325 FALSE  
MSTRG.4956.6 ENSG00000197136 No_inf pgKDN_inf PCNX3 protein_coding   37.0644 30.86596 34.93052 1.185334 0.2823466 0.178417 5.262026 2.9001654 6.98690944 1.3115439 0.29489293 1.26561668 0.14218333 0.097225 0.199900 0.102675 0.531037226 0.005833325 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000197136 E001 0.0000000       11 65615750 65615774 25 +      
ENSG00000197136 E002 0.1176306 0.0117371607 6.971434e-01   11 65615775 65615775 1 + 0.084 0.000 -9.564
ENSG00000197136 E003 1.4376701 0.0160405942 5.213529e-02 2.267224e-01 11 65615776 65615859 84 + 0.498 0.193 -1.943
ENSG00000197136 E004 15.2633768 0.0009191032 5.021888e-02 2.214635e-01 11 65615860 65616464 605 + 1.269 1.123 -0.519
ENSG00000197136 E005 9.7168877 0.0014153494 3.911704e-01 6.763722e-01 11 65616824 65617011 188 + 1.061 0.985 -0.281
ENSG00000197136 E006 8.1041449 0.0064391950 1.413841e-01 3.999271e-01 11 65617250 65617349 100 + 1.019 0.870 -0.557
ENSG00000197136 E007 5.5551585 0.0052498614 1.391778e-01 3.966799e-01 11 65617470 65617509 40 + 0.884 0.715 -0.668
ENSG00000197136 E008 3.2612923 0.0136210650 2.987257e-01 5.917156e-01 11 65617611 65617627 17 + 0.687 0.546 -0.621
ENSG00000197136 E009 7.0345682 0.0027582030 3.948812e-01 6.796888e-01 11 65617628 65617706 79 + 0.941 0.854 -0.331
ENSG00000197136 E010 44.7815277 0.0013630033 3.488251e-01 6.393946e-01 11 65617940 65619067 1128 + 1.677 1.635 -0.144
ENSG00000197136 E011 9.2614818 0.0242027518 8.335640e-01 9.400799e-01 11 65619537 65619660 124 + 1.019 0.997 -0.080
ENSG00000197136 E012 3.4101765 0.0091839766 9.453267e-01 9.851080e-01 11 65619754 65619756 3 + 0.647 0.638 -0.036
ENSG00000197136 E013 9.6501081 0.0015067834 5.559477e-01 7.983515e-01 11 65619757 65619857 101 + 1.001 1.054 0.196
ENSG00000197136 E014 7.3013347 0.0019021419 7.742306e-01 9.132880e-01 11 65619858 65619932 75 + 0.930 0.902 -0.106
ENSG00000197136 E015 10.6694049 0.0014075752 1.762705e-01 4.504099e-01 11 65620339 65620429 91 + 1.115 0.997 -0.428
ENSG00000197136 E016 14.0925289 0.0017900912 3.121922e-01 6.055883e-01 11 65620831 65620966 136 + 1.211 1.132 -0.279
ENSG00000197136 E017 3.2924430 0.0091371259 9.256539e-01 9.776984e-01 11 65622206 65622223 18 + 0.625 0.638 0.057
ENSG00000197136 E018 2.9296672 0.0060573163 8.228884e-01 9.356232e-01 11 65622224 65622244 21 + 0.579 0.610 0.138
ENSG00000197136 E019 11.3460492 0.0015456696 9.109056e-01 9.717870e-01 11 65622245 65622366 122 + 1.085 1.095 0.036
ENSG00000197136 E020 14.6877658 0.0009945079 2.226539e-01 5.099653e-01 11 65623491 65623644 154 + 1.233 1.141 -0.326
ENSG00000197136 E021 6.8075511 0.0284621855 5.764226e-01 8.104891e-01 11 65623929 65623961 33 + 0.919 0.854 -0.249
ENSG00000197136 E022 18.8634872 0.0007389296 5.763455e-01 8.104891e-01 11 65624195 65624366 172 + 1.312 1.276 -0.129
ENSG00000197136 E023 8.3348138 0.0110403016 2.294770e-01 5.180705e-01 11 65624471 65624520 50 + 0.908 1.032 0.464
ENSG00000197136 E024 10.6585975 0.0013082772 1.888879e-01 4.674872e-01 11 65624521 65624581 61 + 1.010 1.123 0.412
ENSG00000197136 E025 11.5957600 0.0011982618 7.317753e-01 8.933837e-01 11 65624925 65625016 92 + 1.085 1.114 0.105
ENSG00000197136 E026 0.0000000       11 65625127 65625170 44 +      
ENSG00000197136 E027 12.4989827 0.0011903363 9.661920e-05 2.306119e-03 11 65625171 65625280 110 + 1.249 0.917 -1.206
ENSG00000197136 E028 10.4616691 0.0256816668 5.820684e-01 8.138723e-01 11 65625405 65625510 106 + 1.085 1.021 -0.235
ENSG00000197136 E029 11.7323777 0.0328570904 6.725187e-01 8.644460e-01 11 65625652 65625744 93 + 1.085 1.123 0.137
ENSG00000197136 E030 14.9635025 0.0011258396 5.255196e-01 7.782152e-01 11 65625904 65626054 151 + 1.222 1.175 -0.167
ENSG00000197136 E031 5.4308396 0.0029230099 1.888930e-02 1.222433e-01 11 65626055 65626779 725 + 0.667 0.931 1.047
ENSG00000197136 E032 0.7427725 0.0139201722 2.578133e-01 5.500574e-01 11 65626853 65626903 51 + 0.155 0.326 1.379
ENSG00000197136 E033 18.2102066 0.0343772092 5.747728e-01 8.095843e-01 11 65626904 65627048 145 + 1.307 1.249 -0.205
ENSG00000197136 E034 23.3933835 0.0007047054 9.361353e-01 9.817516e-01 11 65627405 65627582 178 + 1.387 1.383 -0.014
ENSG00000197136 E035 15.0961029 0.0009567980 7.241114e-01 8.891065e-01 11 65628595 65628703 109 + 1.216 1.191 -0.090
ENSG00000197136 E036 17.1464821 0.0083957118 5.087205e-01 7.669094e-01 11 65628819 65628948 130 + 1.279 1.228 -0.180
ENSG00000197136 E037 11.1587151 0.0023803327 1.427346e-01 4.021284e-01 11 65629357 65629415 59 + 1.136 1.009 -0.459
ENSG00000197136 E038 24.9906512 0.0005534692 7.312025e-02 2.747243e-01 11 65629520 65629735 216 + 1.458 1.352 -0.365
ENSG00000197136 E039 14.0579179 0.0011729379 4.905482e-02 2.183841e-01 11 65630351 65630410 60 + 1.238 1.085 -0.547
ENSG00000197136 E040 28.2276966 0.0008250859 3.594793e-01 6.489108e-01 11 65630411 65630604 194 + 1.486 1.435 -0.175
ENSG00000197136 E041 2.2650716 0.0111668213 7.523949e-05 1.870893e-03 11 65634079 65634125 47 + 0.155 0.738 3.379
ENSG00000197136 E042 31.8247868 0.0011365778 8.757506e-02 3.067045e-01 11 65634126 65634356 231 + 1.470 1.562 0.313
ENSG00000197136 E043 0.8886039 0.0126762633 1.574095e-03 2.122431e-02 11 65634357 65634537 181 + 0.000 0.470 14.588
ENSG00000197136 E044 19.1764445 0.0010736366 8.476875e-02 3.008632e-01 11 65634538 65634641 104 + 1.351 1.235 -0.407
ENSG00000197136 E045 22.2813815 0.0006955134 5.892085e-01 8.178708e-01 11 65634973 65635120 148 + 1.380 1.347 -0.114
ENSG00000197136 E046 33.2171065 0.0007597343 4.168517e-01 6.966560e-01 11 65635218 65635448 231 + 1.513 1.555 0.145
ENSG00000197136 E047 37.8414851 0.0070281064 6.984730e-01 8.770339e-01 11 65635529 65635803 275 + 1.576 1.600 0.080
ENSG00000197136 E048 4.8486498 0.0033827420 4.193241e-04 7.607073e-03 11 65635865 65636031 167 + 0.526 0.945 1.727
ENSG00000197136 E049 30.9210398 0.0005517521 3.143744e-01 6.074182e-01 11 65636174 65636307 134 + 1.477 1.531 0.185
ENSG00000197136 E050 53.6938215 0.0003837504 4.039612e-01 6.867964e-01 11 65636391 65636689 299 + 1.720 1.755 0.116
ENSG00000197136 E051 109.3403930 0.0001544397 1.261138e-06 5.701443e-05 11 65636766 65637439 674 + 1.976 2.108 0.444

Help

Please Click HERE to learn more details about the results from DEXseq.