ENSG00000197142

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000354273 ENSG00000197142 No_inf pgKDN_inf ACSL5 protein_coding protein_coding 17.93082 7.510925 21.55537 0.2263318 1.282025 1.519735 0.8959682 0.0000000 1.9962083 0.0000000 1.9962083 7.648328 0.03621667 0.00000 0.082675 0.082675 1.00000000 0.02411937 FALSE TRUE
ENST00000356116 ENSG00000197142 No_inf pgKDN_inf ACSL5 protein_coding protein_coding 17.93082 7.510925 21.55537 0.2263318 1.282025 1.519735 11.7042290 3.3781034 14.3882349 1.1575980 2.1616574 2.087342 0.62074167 0.46275 0.684450 0.221700 0.74880732 0.02411937 FALSE TRUE
ENST00000433418 ENSG00000197142 No_inf pgKDN_inf ACSL5 protein_coding protein_coding 17.93082 7.510925 21.55537 0.2263318 1.282025 1.519735 0.3482925 0.6116585 0.2465149 0.6116585 0.2465149 -1.277079 0.03234167 0.07615 0.012350 -0.063800 0.87600266 0.02411937 FALSE TRUE
ENST00000467340 ENSG00000197142 No_inf pgKDN_inf ACSL5 protein_coding retained_intron 17.93082 7.510925 21.55537 0.2263318 1.282025 1.519735 0.7413953 0.0000000 1.4413214 0.0000000 1.4413214 7.181223 0.03127500 0.00000 0.061900 0.061900 1.00000000 0.02411937 FALSE FALSE
ENST00000496328 ENSG00000197142 No_inf pgKDN_inf ACSL5 protein_coding retained_intron 17.93082 7.510925 21.55537 0.2263318 1.282025 1.519735 2.2447416 0.0000000 1.7904461 0.0000000 1.7904461 7.492211 0.08805833 0.00000 0.074150 0.074150 1.00000000 0.02411937 FALSE TRUE
MSTRG.4007.6 ENSG00000197142 No_inf pgKDN_inf ACSL5 protein_coding   17.93082 7.510925 21.55537 0.2263318 1.282025 1.519735 1.6814572 3.3763773 1.2917492 0.8219325 1.2917492 -1.379291 0.17365000 0.44215 0.064675 -0.377475 0.02411937 0.02411937 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000197142 E001 0.0000000       10 112374116 112374269 154 +      
ENSG00000197142 E002 0.4833068 0.0171272484 0.9683338437   10 112375235 112375542 308 + 0.167 0.141 -0.292
ENSG00000197142 E003 0.2441403 0.0163243823 0.4811325149   10 112376198 112376204 7 + 0.063 0.141 1.294
ENSG00000197142 E004 0.4804091 0.0158625466 0.9682893034   10 112376205 112376220 16 + 0.167 0.141 -0.291
ENSG00000197142 E005 8.9800456 0.0021693065 0.0401453911 0.194205567 10 112376221 112376448 228 + 1.023 0.804 -0.830
ENSG00000197142 E006 11.3593365 0.0063036602 0.0156294594 0.108113283 10 112394918 112395102 185 + 1.120 0.876 -0.904
ENSG00000197142 E007 7.1798654 0.0443968584 0.1819034091 0.457955397 10 112398901 112399009 109 + 0.930 0.748 -0.706
ENSG00000197142 E008 4.4369823 0.0045594354 0.3157123370 0.608538067 10 112404511 112404575 65 + 0.743 0.609 -0.564
ENSG00000197142 E009 5.2919514 0.0034905650 0.5616910882 0.801860837 10 112404705 112404806 102 + 0.789 0.717 -0.291
ENSG00000197142 E010 0.0000000       10 112408422 112408521 100 +      
ENSG00000197142 E011 0.0000000       10 112409507 112409532 26 +      
ENSG00000197142 E012 1.7926863 0.0100625794 0.4372051007 0.713528425 10 112409533 112409685 153 + 0.459 0.332 -0.706
ENSG00000197142 E013 3.3780508 0.0270722056 0.7068481730 0.881032316 10 112410463 112410495 33 + 0.599 0.648 0.216
ENSG00000197142 E014 6.4016248 0.0053641764 0.6176903845 0.834510989 10 112410584 112410635 52 + 0.821 0.876 0.211
ENSG00000197142 E015 0.3631878 0.0166143839 0.8474495846   10 112411383 112411455 73 + 0.118 0.141 0.294
ENSG00000197142 E016 6.9772273 0.0106649924 0.8362475301 0.941287642 10 112411456 112411529 74 + 0.879 0.853 -0.098
ENSG00000197142 E017 5.9629135 0.0308054296 0.0591594141 0.244105565 10 112411902 112411979 78 + 0.879 0.609 -1.098
ENSG00000197142 E018 11.5080770 0.0467506872 0.1726888884 0.445508586 10 112413173 112413307 135 + 1.110 0.938 -0.632
ENSG00000197142 E019 14.4752269 0.0010166856 0.0054958959 0.053007091 10 112416888 112417022 135 + 1.217 0.975 -0.876
ENSG00000197142 E020 14.2741066 0.0009882748 0.0745052345 0.278299509 10 112417846 112417941 96 + 1.191 1.040 -0.545
ENSG00000197142 E021 11.8196736 0.0012639372 0.8819115676 0.960292770 10 112421593 112421665 73 + 1.071 1.083 0.043
ENSG00000197142 E022 9.8122145 0.0162828209 0.2178392225 0.504290785 10 112421947 112421980 34 + 0.960 1.083 0.452
ENSG00000197142 E023 15.0114094 0.0009741371 0.1557086864 0.421734158 10 112421981 112422035 55 + 1.136 1.243 0.380
ENSG00000197142 E024 13.7859341 0.0072146549 0.4360602317 0.712557282 10 112422325 112422441 117 + 1.115 1.181 0.236
ENSG00000197142 E025 0.0000000       10 112425338 112425481 144 +      
ENSG00000197142 E026 9.3432519 0.0254404548 0.2200207796 0.506751536 10 112426258 112426359 102 + 0.938 1.069 0.486
ENSG00000197142 E027 0.4896324 0.0161679314 0.3762814262   10 112426360 112426608 249 + 0.118 0.247 1.294
ENSG00000197142 E028 12.1181257 0.0295441192 0.2740585718 0.567635484 10 112426788 112426859 72 + 1.048 1.159 0.400
ENSG00000197142 E029 59.9625932 0.0005420638 0.0002690587 0.005321688 10 112427218 112428379 1162 + 1.706 1.835 0.436

Help

Please Click HERE to learn more details about the results from DEXseq.