ENSG00000197694

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000372731 ENSG00000197694 No_inf pgKDN_inf SPTAN1 protein_coding protein_coding 57.54196 68.03707 45.45308 2.460028 3.842019 -0.5818374 5.143117 1.365150 7.2964330 1.3651497 1.0597433 2.4095786 0.10150833 0.01995 0.167400 0.147450 0.0164410 0.016441 FALSE TRUE
ENST00000630147 ENSG00000197694 No_inf pgKDN_inf SPTAN1 protein_coding retained_intron 57.54196 68.03707 45.45308 2.460028 3.842019 -0.5818374 19.219148 24.616355 12.1919022 3.8810199 4.7359794 -1.0130970 0.32195000 0.35745 0.245600 -0.111850 0.8039302 0.016441   FALSE
ENST00000704206 ENSG00000197694 No_inf pgKDN_inf SPTAN1 protein_coding protein_coding 57.54196 68.03707 45.45308 2.460028 3.842019 -0.5818374 5.037678 6.103434 7.2146751 2.1004598 0.4777812 0.2409498 0.09658333 0.09065 0.164450 0.073800 0.7240813 0.016441 FALSE TRUE
ENST00000704207 ENSG00000197694 No_inf pgKDN_inf SPTAN1 protein_coding nonsense_mediated_decay 57.54196 68.03707 45.45308 2.460028 3.842019 -0.5818374 6.632930 6.681441 6.2543037 0.7951914 1.3355928 -0.0951627 0.11610000 0.09895 0.134825 0.035875 0.8296729 0.016441 FALSE TRUE
MSTRG.29387.24 ENSG00000197694 No_inf pgKDN_inf SPTAN1 protein_coding   57.54196 68.03707 45.45308 2.460028 3.842019 -0.5818374 5.711549 5.550863 4.5522237 2.1640626 0.1761919 -0.2855716 0.10088333 0.08195 0.101700 0.019750 0.8376212 0.016441 FALSE TRUE
MSTRG.29387.43 ENSG00000197694 No_inf pgKDN_inf SPTAN1 protein_coding   57.54196 68.03707 45.45308 2.460028 3.842019 -0.5818374 1.997562 4.519906 0.5036234 2.0303936 0.5036234 -3.1406983 0.03285833 0.06585 0.014400 -0.051450 0.4310820 0.016441 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000197694 E001 0.1187032 0.0118150405 4.813426e-01   9 128552558 128552586 29 + 0.099 0.000 -11.818
ENSG00000197694 E002 0.1187032 0.0118150405 4.813426e-01   9 128552587 128552589 3 + 0.099 0.000 -14.999
ENSG00000197694 E003 0.1187032 0.0118150405 4.813426e-01   9 128552590 128552592 3 + 0.099 0.000 -14.999
ENSG00000197694 E004 0.2363338 0.0156235278 2.066631e-01   9 128552593 128552601 9 + 0.180 0.000 -15.921
ENSG00000197694 E005 0.2346346 0.0155841515 2.066702e-01   9 128552602 128552602 1 + 0.180 0.000 -15.921
ENSG00000197694 E006 2.0654916 0.0069610561 3.447697e-01 0.635893966 9 128552603 128552696 94 + 0.553 0.420 -0.657
ENSG00000197694 E007 0.1186381 0.0117970353 4.813874e-01   9 128552746 128552805 60 + 0.099 0.000 -14.999
ENSG00000197694 E008 0.0000000       9 128552836 128552968 133 +      
ENSG00000197694 E009 0.0000000       9 128552969 128553031 63 +      
ENSG00000197694 E010 0.0000000       9 128553032 128553080 49 +      
ENSG00000197694 E011 0.0000000       9 128553081 128553138 58 +      
ENSG00000197694 E012 0.0000000       9 128553139 128553146 8 +      
ENSG00000197694 E013 0.1176306 0.0116952109 4.815043e-01   9 128553147 128553311 165 + 0.099 0.000 -15.000
ENSG00000197694 E014 0.0000000       9 128553312 128553321 10 +      
ENSG00000197694 E015 0.0000000       9 128553322 128553331 10 +      
ENSG00000197694 E016 0.0000000       9 128553332 128553362 31 +      
ENSG00000197694 E017 0.0000000       9 128553363 128553382 20 +      
ENSG00000197694 E018 0.0000000       9 128555349 128555399 51 +      
ENSG00000197694 E019 0.9792648 0.1027964737 8.837560e-01 0.960946438 9 128566738 128566777 40 + 0.307 0.286 -0.142
ENSG00000197694 E020 1.2149719 0.0553242127 4.458158e-01 0.720201013 9 128566778 128566809 32 + 0.405 0.286 -0.727
ENSG00000197694 E021 4.1626167 0.0034545765 7.480893e-01 0.900612710 9 128566810 128566977 168 + 0.730 0.696 -0.142
ENSG00000197694 E022 6.8327381 0.0021481171 2.294074e-01 0.518043516 9 128568772 128568897 126 + 0.953 0.834 -0.452
ENSG00000197694 E023 0.1268540 0.0123141441 6.008929e-01   9 128572756 128572824 69 + 0.000 0.091 13.874
ENSG00000197694 E024 6.4673571 0.0021605013 2.809773e-01 0.574219507 9 128574675 128574788 114 + 0.927 0.819 -0.415
ENSG00000197694 E025 4.5151925 0.0034471022 4.120426e-01 0.693532878 9 128574789 128574815 27 + 0.788 0.696 -0.377
ENSG00000197694 E026 8.8219959 0.0155264902 8.204062e-01 0.934878238 9 128575199 128575345 147 + 1.000 0.983 -0.062
ENSG00000197694 E027 0.1272623 0.0123204768 6.008432e-01   9 128576721 128576822 102 + 0.000 0.091 13.874
ENSG00000197694 E028 3.9312753 0.0354095636 9.569688e-01 0.989750547 9 128576823 128576855 33 + 0.686 0.696 0.038
ENSG00000197694 E029 6.4433689 0.0250262088 9.752160e-02 0.325397785 9 128576856 128576956 101 + 0.965 0.770 -0.750
ENSG00000197694 E030 10.8458639 0.0066728779 1.136607e-01 0.354878648 9 128577129 128577273 145 + 1.142 1.004 -0.501
ENSG00000197694 E031 13.4020910 0.0010690461 5.750220e-02 0.239748355 9 128577352 128577506 155 + 1.229 1.086 -0.511
ENSG00000197694 E032 10.2479637 0.0056357441 1.891691e-01 0.467749089 9 128578110 128578245 136 + 1.108 0.994 -0.418
ENSG00000197694 E033 6.4912819 0.0044895141 5.966205e-01 0.822723089 9 128579637 128579738 102 + 0.900 0.849 -0.197
ENSG00000197694 E034 3.6574043 0.0041360697 3.067684e-01 0.600008983 9 128580922 128580952 31 + 0.730 0.605 -0.529
ENSG00000197694 E035 6.2937738 0.0287180158 1.221153e-02 0.091538134 9 128580953 128581059 107 + 1.000 0.696 -1.185
ENSG00000197694 E036 3.2772820 0.0077113797 1.083136e-01 0.345208374 9 128581782 128581805 24 + 0.730 0.522 -0.908
ENSG00000197694 E037 5.8302723 0.0070945745 7.708040e-02 0.284043052 9 128581806 128581892 87 + 0.927 0.735 -0.752
ENSG00000197694 E038 0.0000000       9 128581893 128581946 54 +      
ENSG00000197694 E039 8.0044771 0.0017965094 1.635701e-02 0.111164178 9 128582479 128582556 78 + 1.062 0.834 -0.856
ENSG00000197694 E040 12.7023162 0.0023380161 1.871283e-01 0.465009938 9 128582694 128582849 156 + 1.187 1.086 -0.364
ENSG00000197694 E041 15.8235005 0.0209449545 8.541470e-01 0.948506837 9 128583077 128583281 205 + 1.229 1.220 -0.030
ENSG00000197694 E042 15.5659650 0.0008640434 7.215835e-01 0.887959507 9 128583788 128583969 182 + 1.229 1.208 -0.074
ENSG00000197694 E043 15.3199232 0.0176500270 7.747772e-01 0.913493219 9 128584282 128584465 184 + 1.222 1.202 -0.073
ENSG00000197694 E044 8.7422660 0.0365191700 6.040733e-01 0.827367820 9 128584466 128584525 60 + 0.953 1.014 0.225
ENSG00000197694 E045 15.9103227 0.0081848856 3.758881e-01 0.663129219 9 128584721 128584843 123 + 1.261 1.195 -0.231
ENSG00000197694 E046 22.2433604 0.0065162766 1.855622e-01 0.463330427 9 128585748 128585965 218 + 1.410 1.323 -0.301
ENSG00000197694 E047 12.5753700 0.0034828484 2.282694e-01 0.516789768 9 128587606 128587698 93 + 1.180 1.086 -0.338
ENSG00000197694 E048 15.0121134 0.0041540942 1.262824e-01 0.376765445 9 128588809 128588943 135 + 1.261 1.148 -0.401
ENSG00000197694 E049 12.7982507 0.0036878310 7.785291e-02 0.285465961 9 128591477 128591579 103 + 1.209 1.069 -0.501
ENSG00000197694 E050 8.1402258 0.0022019233 4.401613e-02 0.205055442 9 128591580 128591625 46 + 1.052 0.863 -0.709
ENSG00000197694 E051 4.1244358 0.0034305223 9.305013e-02 0.316943716 9 128592983 128592983 1 + 0.806 0.605 -0.834
ENSG00000197694 E052 10.8221144 0.0012398293 2.101922e-02 0.130936781 9 128592984 128593042 59 + 1.165 0.973 -0.700
ENSG00000197694 E053 3.2993826 0.1279714689 7.932252e-01 0.921148250 9 128593043 128594121 1079 + 0.662 0.605 -0.248
ENSG00000197694 E054 0.5971958 0.0151172689 1.381725e-01 0.395532679 9 128594122 128594174 53 + 0.307 0.091 -2.142
ENSG00000197694 E055 25.7890149 0.0005420421 1.194469e-01 0.365310514 9 128594175 128594373 199 + 1.470 1.386 -0.293
ENSG00000197694 E056 15.0149507 0.0016023445 5.202801e-01 0.774707612 9 128598400 128598485 86 + 1.173 1.226 0.190
ENSG00000197694 E057 8.7102153 0.0017395960 9.112056e-01 0.971786979 9 128598486 128598504 19 + 0.989 0.983 -0.020
ENSG00000197694 E058 0.1265070 0.0122931839 6.008885e-01   9 128598505 128598726 222 + 0.000 0.091 13.874
ENSG00000197694 E059 9.5119876 0.0014531081 1.079333e-01 0.344454218 9 128598963 128598986 24 + 1.090 0.950 -0.514
ENSG00000197694 E060 3.6643014 0.0133001036 5.195008e-01 0.774188302 9 128598987 128599963 977 + 0.709 0.630 -0.335
ENSG00000197694 E061 0.1271363 0.0123191022 6.008354e-01   9 128599964 128600079 116 + 0.000 0.091 13.874
ENSG00000197694 E062 11.0757933 0.0012161807 3.700513e-02 0.185245455 9 128600080 128600115 36 + 1.165 0.994 -0.622
ENSG00000197694 E063 0.3795211 0.5380061921 3.302657e-01   9 128601345 128601400 56 + 0.000 0.230 14.439
ENSG00000197694 E064 9.6034051 0.0014182755 3.052162e-02 0.164385154 9 128603543 128603590 48 + 1.117 0.927 -0.697
ENSG00000197694 E065 10.6856236 0.0267228654 8.540419e-01 0.948478260 9 128604326 128604417 92 + 1.053 1.077 0.090
ENSG00000197694 E066 16.4835045 0.0230872853 2.488097e-01 0.539686488 9 128605034 128605178 145 + 1.296 1.189 -0.378
ENSG00000197694 E067 5.2555389 0.0035191070 4.191630e-01 0.698759164 9 128605296 128605326 31 + 0.840 0.753 -0.344
ENSG00000197694 E068 14.9507093 0.0010629305 6.687009e-01 0.862053047 9 128605327 128605477 151 + 1.216 1.189 -0.095
ENSG00000197694 E069 12.4220947 0.0020020287 5.590718e-02 0.235606958 9 128607604 128607703 100 + 1.202 1.051 -0.541
ENSG00000197694 E070 22.3808870 0.0006116739 3.788697e-01 0.665709605 9 128607852 128608035 184 + 1.334 1.394 0.208
ENSG00000197694 E071 9.2231948 0.0042535013 5.870435e-01 0.816880049 9 128608036 128608049 14 + 0.977 1.033 0.206
ENSG00000197694 E072 0.6142230 0.2199331323 7.696679e-01 0.911054090 9 128608050 128608129 80 + 0.180 0.230 0.444
ENSG00000197694 E073 15.3417659 0.0067215717 8.684107e-01 0.954837109 9 128608130 128608175 46 + 1.202 1.220 0.066
ENSG00000197694 E074 21.2467365 0.0193884264 1.707518e-01 0.443061354 9 128608176 128608276 101 + 1.401 1.293 -0.375
ENSG00000197694 E075 15.3839518 0.0344159282 2.549275e-01 0.546864241 9 128608874 128608938 65 + 1.267 1.162 -0.371
ENSG00000197694 E076 16.4839987 0.0080723606 2.019254e-01 0.484305551 9 128608939 128608977 39 + 1.290 1.195 -0.335
ENSG00000197694 E077 25.0153293 0.0005457303 7.106571e-01 0.883057755 9 128609122 128609238 117 + 1.423 1.406 -0.057
ENSG00000197694 E078 16.1661918 0.0008964067 5.260748e-01 0.778609790 9 128609239 128609284 46 + 1.255 1.214 -0.142
ENSG00000197694 E079 0.1265070 0.0122931839 6.008885e-01   9 128609285 128609561 277 + 0.000 0.091 13.874
ENSG00000197694 E080 0.0000000       9 128609592 128609650 59 +      
ENSG00000197694 E081 1.4974062 0.0091168759 1.175517e-01 0.362225416 9 128609651 128609665 15 + 0.248 0.491 1.443
ENSG00000197694 E082 0.3809703 0.0268161208 1.281148e-01   9 128611602 128611712 111 + 0.000 0.230 15.308
ENSG00000197694 E083 0.0000000       9 128611713 128611713 1 +      
ENSG00000197694 E084 25.4814835 0.0006347385 6.030161e-01 0.826843729 9 128611714 128611845 132 + 1.435 1.410 -0.087
ENSG00000197694 E085 0.0000000       9 128611894 128612108 215 +      
ENSG00000197694 E086 27.9747735 0.0005551553 9.289878e-01 0.979011323 9 128612109 128612246 138 + 1.455 1.465 0.035
ENSG00000197694 E087 23.7676659 0.0005766951 5.304990e-01 0.781579963 9 128613381 128613485 105 + 1.410 1.377 -0.112
ENSG00000197694 E088 32.5890118 0.0009487497 1.183140e-02 0.089721327 9 128615632 128615840 209 + 1.589 1.462 -0.435
ENSG00000197694 E089 30.0665318 0.0004606873 9.688739e-01 0.993641226 9 128617640 128617760 121 + 1.489 1.492 0.011
ENSG00000197694 E090 31.8501522 0.0004354137 3.635269e-01 0.652418968 9 128617987 128618108 122 + 1.485 1.538 0.182
ENSG00000197694 E091 26.7943942 0.0004923970 2.475510e-01 0.538276661 9 128618871 128618952 82 + 1.474 1.414 -0.208
ENSG00000197694 E092 19.5820200 0.0006806381 3.923630e-01 0.677369683 9 128618953 128619003 51 + 1.339 1.288 -0.178
ENSG00000197694 E093 26.4936573 0.0074136153 1.434998e-01 0.403415074 9 128621158 128621256 99 + 1.378 1.482 0.359
ENSG00000197694 E094 0.3522653 0.0230732308 8.452205e-02   9 128621667 128621998 332 + 0.248 0.000 -16.421
ENSG00000197694 E095 0.1176306 0.0116952109 4.815043e-01   9 128621999 128622102 104 + 0.099 0.000 -15.000
ENSG00000197694 E096 33.7368364 0.0004185502 7.973039e-01 0.923486218 9 128624328 128624487 160 + 1.543 1.536 -0.027
ENSG00000197694 E097 1.6412565 0.0081394440 1.999635e-03 0.025562536 9 128624488 128624824 337 + 0.099 0.579 3.443
ENSG00000197694 E098 0.1265070 0.0122931839 6.008885e-01   9 128624825 128624865 41 + 0.000 0.091 13.874
ENSG00000197694 E099 1.4891293 0.0086504045 3.349752e-01 0.626832085 9 128624866 128625102 237 + 0.307 0.457 0.858
ENSG00000197694 E100 24.8296375 0.0005819036 1.568518e-01 0.423253933 9 128625103 128625179 77 + 1.451 1.373 -0.270
ENSG00000197694 E101 33.7413074 0.0005842808 8.903145e-01 0.963370162 9 128625769 128625911 143 + 1.540 1.538 -0.006
ENSG00000197694 E102 20.5239750 0.0007125305 4.533558e-01 0.726140021 9 128625912 128625961 50 + 1.302 1.355 0.188
ENSG00000197694 E103 11.7782342 0.0422415499 7.742826e-01 0.913289355 9 128625962 128625978 17 + 1.090 1.118 0.101
ENSG00000197694 E104 0.2537694 0.0159992778 2.828966e-01   9 128626307 128626390 84 + 0.000 0.166 14.808
ENSG00000197694 E105 33.3969605 0.0013574829 1.927928e-01 0.472597402 9 128626391 128626510 120 + 1.568 1.505 -0.216
ENSG00000197694 E106 42.9510324 0.0003256013 1.109562e-01 0.349653120 9 128626511 128626687 177 + 1.597 1.675 0.266
ENSG00000197694 E107 0.2454921 0.0163144265 9.311511e-01   9 128627000 128627003 4 + 0.099 0.091 -0.142
ENSG00000197694 E108 0.2541163 0.0160059364 2.829006e-01   9 128627004 128627090 87 + 0.000 0.166 14.808
ENSG00000197694 E109 0.0000000       9 128627091 128627175 85 +      
ENSG00000197694 E110 25.4676181 0.0007995939 2.266397e-01 0.514880686 9 128627386 128627494 109 + 1.378 1.455 0.265
ENSG00000197694 E111 6.4970368 0.0105412943 9.935538e-01 1.000000000 9 128627495 128627498 4 + 0.871 0.876 0.022
ENSG00000197694 E112 2.0237990 0.0069224171 3.324970e-04 0.006318849 9 128627499 128627924 426 + 0.099 0.653 3.765
ENSG00000197694 E113 5.0378684 0.0124102937 6.860670e-01 0.870355197 9 128627925 128627942 18 + 0.750 0.803 0.212
ENSG00000197694 E114 4.3906426 0.0549746461 2.131253e-03 0.026800423 9 128627943 128628370 428 + 0.405 0.890 2.131
ENSG00000197694 E115 4.0823968 0.0035079181 2.135913e-01 0.498738478 9 128628371 128629043 673 + 0.611 0.770 0.665
ENSG00000197694 E116 1.8672376 0.0364414859 1.267444e-01 0.377399366 9 128629125 128629187 63 + 0.307 0.552 1.317
ENSG00000197694 E117 5.2533823 0.0055215397 7.120526e-04 0.011498157 9 128629660 128630320 661 + 0.520 0.939 1.732
ENSG00000197694 E118 0.6070421 0.0147313591 5.704402e-01 0.806987246 9 128630321 128630375 55 + 0.248 0.166 -0.727
ENSG00000197694 E119 0.0000000       9 128630419 128630574 156 +      
ENSG00000197694 E120 0.4983826 0.0297815331 3.795276e-01   9 128631608 128631796 189 + 0.099 0.230 1.443
ENSG00000197694 E121 1.1232109 0.4590635778 3.226998e-01 0.615608839 9 128631797 128632019 223 + 0.180 0.420 1.668
ENSG00000197694 E122 0.2438580 0.0163248290 9.310479e-01   9 128632020 128632126 107 + 0.099 0.091 -0.142
ENSG00000197694 E123 40.8320930 0.0003783926 3.338752e-01 0.625794013 9 128632127 128632323 197 + 1.592 1.642 0.172
ENSG00000197694 E124 27.9551219 0.0026324064 1.996133e-01 0.481321304 9 128632431 128632484 54 + 1.414 1.495 0.280
ENSG00000197694 E125 34.8080131 0.0004399024 8.003660e-03 0.069166138 9 128632572 128632624 53 + 1.470 1.611 0.481
ENSG00000197694 E126 36.8039419 0.0028680155 3.849917e-03 0.041362828 9 128632625 128632685 61 + 1.482 1.642 0.549
ENSG00000197694 E127 37.5237898 0.0089758973 2.310686e-02 0.138687449 9 128632686 128632718 33 + 1.500 1.644 0.494
ENSG00000197694 E128 0.3802764 0.0267129554 1.280909e-01   9 128632719 128632807 89 + 0.000 0.230 15.309
ENSG00000197694 E129 72.3805429 0.0023264062 4.585703e-03 0.046612379 9 128632808 128632955 148 + 1.796 1.914 0.400
ENSG00000197694 E130 0.3812526 0.0158576581 1.262382e-01   9 128632956 128633190 235 + 0.000 0.230 15.352
ENSG00000197694 E131 120.0223488 0.0042423604 8.766623e-05 0.002132697 9 128633209 128633662 454 + 1.992 2.144 0.510

Help

Please Click HERE to learn more details about the results from DEXseq.