ENSG00000197712

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000358869 ENSG00000197712 No_inf pgKDN_inf FAM114A1 protein_coding protein_coding 3.654889 2.873217 3.964184 0.3728449 0.3289855 0.4629792 1.6790282 1.445129 2.1151532 0.1867333 0.8062854 0.5464201 0.50272500 0.557625 0.58585 0.028225 0.91640223 0.02000379 FALSE TRUE
ENST00000508737 ENSG00000197712 No_inf pgKDN_inf FAM114A1 protein_coding retained_intron 3.654889 2.873217 3.964184 0.3728449 0.3289855 0.4629792 0.6782970 1.428088 0.0000000 0.4908710 0.0000000 -7.1680084 0.19248333 0.442375 0.00000 -0.442375 0.02000379 0.02000379 FALSE TRUE
ENST00000510213 ENSG00000197712 No_inf pgKDN_inf FAM114A1 protein_coding protein_coding 3.654889 2.873217 3.964184 0.3728449 0.3289855 0.4629792 0.1357613 0.000000 0.2802026 0.0000000 0.1617773 4.8589883 0.02938333 0.000000 0.06270 0.062700 0.62516190 0.02000379 FALSE FALSE
ENST00000515037 ENSG00000197712 No_inf pgKDN_inf FAM114A1 protein_coding protein_coding 3.654889 2.873217 3.964184 0.3728449 0.3289855 0.4629792 1.1618026 0.000000 1.5688280 0.0000000 0.9164143 7.3027102 0.27541667 0.000000 0.35145 0.351450 0.54613552 0.02000379 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000197712 E001 0.0000000       4 38867677 38867750 74 +      
ENSG00000197712 E002 0.1271363 0.0124406119 0.3653762314   4 38867751 38867805 55 + 0.000 0.112 8.896
ENSG00000197712 E003 0.3617709 0.0168008416 0.8451305561   4 38867806 38867834 29 + 0.149 0.112 -0.474
ENSG00000197712 E004 1.0987247 0.0488672570 0.8270649681 0.937415614 4 38868398 38868546 149 + 0.305 0.337 0.204
ENSG00000197712 E005 3.6719757 0.0688742345 0.5464586352 0.792229147 4 38878071 38878426 356 + 0.630 0.709 0.332
ENSG00000197712 E006 1.9267450 0.0330905598 0.2062443687 0.489878938 4 38891743 38891830 88 + 0.538 0.337 -1.059
ENSG00000197712 E007 3.5879479 0.0181183502 0.0057978643 0.055062866 4 38905522 38905635 114 + 0.785 0.392 -1.796
ENSG00000197712 E008 2.5129740 0.0069637202 0.0329447725 0.172224810 4 38905755 38905861 107 + 0.650 0.337 -1.561
ENSG00000197712 E009 2.3134341 0.0065632645 0.9086154441 0.971025660 4 38908592 38908726 135 + 0.511 0.525 0.067
ENSG00000197712 E010 0.0000000       4 38914619 38914920 302 +      
ENSG00000197712 E011 2.0951052 0.0071644394 0.1343557927 0.389609405 4 38914921 38915073 153 + 0.385 0.595 1.041
ENSG00000197712 E012 3.0009371 0.1153725924 0.1558939840 0.421911082 4 38922770 38922893 124 + 0.688 0.441 -1.136
ENSG00000197712 E013 0.0000000       4 38929099 38929241 143 +      
ENSG00000197712 E014 2.7647948 0.0056897845 0.1377011018 0.394999001 4 38929242 38929333 92 + 0.650 0.441 -0.976
ENSG00000197712 E015 4.5869710 0.0034410161 0.2339576523 0.523012682 4 38931451 38931612 162 + 0.800 0.656 -0.589
ENSG00000197712 E016 4.7437530 0.0032349059 0.9740209818 0.995387733 4 38932235 38932374 140 + 0.755 0.756 0.003
ENSG00000197712 E017 1.0982450 0.0126772318 0.8247526711 0.936428402 4 38935718 38935731 14 + 0.305 0.337 0.204
ENSG00000197712 E018 1.8041638 0.0088815807 0.2541721146 0.545829935 4 38935732 38935790 59 + 0.511 0.337 -0.933
ENSG00000197712 E019 0.0000000       4 38938468 38938704 237 +      
ENSG00000197712 E020 2.4129076 0.0080369403 0.3173217115 0.610083742 4 38940968 38941021 54 + 0.586 0.441 -0.696
ENSG00000197712 E021 32.5621119 0.0006808805 0.0000832323 0.002040478 4 38943456 38945739 2284 + 1.452 1.600 0.504

Help

Please Click HERE to learn more details about the results from DEXseq.