ENSG00000197724

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000359246 ENSG00000197724 No_inf pgKDN_inf PHF2 protein_coding protein_coding 10.01315 13.47482 8.458839 0.3361262 0.557179 -0.6710997 2.3581256 3.136750 1.9502398 0.7481434 0.2238507 -0.6828323 0.2403333 0.230000 0.231300 0.001300 1.00000000 0.01049617 FALSE TRUE
ENST00000610682 ENSG00000197724 No_inf pgKDN_inf PHF2 protein_coding protein_coding 10.01315 13.47482 8.458839 0.3361262 0.557179 -0.6710997 1.4389201 0.000000 2.9078227 0.0000000 1.1354415 8.1887484 0.1677333 0.000000 0.329325 0.329325 0.01049617 0.01049617 FALSE TRUE
MSTRG.28993.4 ENSG00000197724 No_inf pgKDN_inf PHF2 protein_coding   10.01315 13.47482 8.458839 0.3361262 0.557179 -0.6710997 2.0003316 1.530375 2.7387038 0.5584464 0.1420017 0.8354694 0.2199083 0.116300 0.330575 0.214275 0.34684364 0.01049617 FALSE TRUE
MSTRG.28993.8 ENSG00000197724 No_inf pgKDN_inf PHF2 protein_coding   10.01315 13.47482 8.458839 0.3361262 0.557179 -0.6710997 3.1156960 6.801605 0.6812898 1.4102605 0.6812898 -3.3006321 0.2749833 0.510125 0.085975 -0.424150 0.04051534 0.01049617 FALSE TRUE
MSTRG.28993.9 ENSG00000197724 No_inf pgKDN_inf PHF2 protein_coding   10.01315 13.47482 8.458839 0.3361262 0.557179 -0.6710997 0.5215645 1.564694 0.0000000 1.5646936 0.0000000 -7.2989274 0.0364250 0.109275 0.000000 -0.109275 0.91860238 0.01049617 TRUE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000197724 E001 0.2435110 0.0162317807 0.691832935   9 93576584 93576626 43 + 0.119 0.075 -0.741
ENSG00000197724 E002 0.7353770 0.0143618489 0.538427079 0.78712544 9 93576627 93576746 120 + 0.290 0.195 -0.741
ENSG00000197724 E003 2.3340558 0.1708185920 0.526115088 0.77862522 9 93576747 93576871 125 + 0.586 0.461 -0.591
ENSG00000197724 E004 1.8444184 0.0088478692 0.475239712 0.74182619 9 93629970 93630055 86 + 0.507 0.401 -0.548
ENSG00000197724 E005 2.7038803 0.0051929944 0.452692280 0.72574592 9 93636411 93636465 55 + 0.619 0.515 -0.478
ENSG00000197724 E006 1.9584971 0.0072085126 0.316509441 0.60944769 9 93636466 93636469 4 + 0.548 0.401 -0.741
ENSG00000197724 E007 2.3301492 0.0065254062 0.388127894 0.67398467 9 93636470 93636525 56 + 0.585 0.461 -0.589
ENSG00000197724 E008 2.0925234 0.0085020305 0.759144260 0.90542750 9 93645629 93645716 88 + 0.507 0.461 -0.226
ENSG00000197724 E009 2.4816751 0.0118969659 0.491143842 0.75354064 9 93645717 93645789 73 + 0.462 0.562 0.482
ENSG00000197724 E010 5.2260253 0.0263637937 0.276845499 0.57024844 9 93649071 93649212 142 + 0.681 0.825 0.582
ENSG00000197724 E011 0.1271363 0.0123538210 1.000000000   9 93650859 93650891 33 + 0.000 0.075 8.789
ENSG00000197724 E012 2.1249093 0.0084290805 0.222395604 0.50973968 9 93653179 93653211 33 + 0.355 0.539 0.960
ENSG00000197724 E013 3.0555116 0.0088476441 0.150859786 0.41373293 9 93653212 93653266 55 + 0.709 0.515 -0.856
ENSG00000197724 E014 1.6931076 0.1040916000 0.092321740 0.31558377 9 93653267 93653272 6 + 0.585 0.289 -1.587
ENSG00000197724 E015 4.3914502 0.0050639693 0.030504835 0.16434400 9 93653273 93653365 93 + 0.865 0.605 -1.062
ENSG00000197724 E016 5.0382819 0.0522914103 0.337644982 0.62944746 9 93654413 93654517 105 + 0.846 0.713 -0.529
ENSG00000197724 E017 3.6794901 0.0527816363 0.396606519 0.68127193 9 93654518 93654575 58 + 0.735 0.605 -0.547
ENSG00000197724 E018 1.8410814 0.0201414017 0.483477155 0.74798631 9 93655934 93655940 7 + 0.507 0.401 -0.548
ENSG00000197724 E019 3.5584934 0.0186578481 0.450081557 0.72352159 9 93655941 93656021 81 + 0.709 0.605 -0.441
ENSG00000197724 E020 3.0430924 0.0071138858 0.066107162 0.25892692 9 93656489 93656595 107 + 0.735 0.489 -1.088
ENSG00000197724 E021 3.7930685 0.0040109860 0.114426326 0.35636156 9 93658145 93658236 92 + 0.783 0.584 -0.834
ENSG00000197724 E022 4.2162987 0.0034192215 0.530726919 0.78163231 9 93659511 93659600 90 + 0.651 0.729 0.324
ENSG00000197724 E023 11.1449729 0.0093283369 0.580638866 0.81298485 9 93660192 93660560 369 + 1.034 1.085 0.188
ENSG00000197724 E024 2.8365232 0.0048975440 0.875794208 0.95774620 9 93662907 93662957 51 + 0.585 0.562 -0.103
ENSG00000197724 E025 3.5435469 0.0139098975 0.139113378 0.39659786 9 93662958 93663026 69 + 0.759 0.562 -0.840
ENSG00000197724 E026 5.0416230 0.0539657257 0.532577846 0.78303447 9 93663517 93663635 119 + 0.826 0.729 -0.386
ENSG00000197724 E027 4.2197326 0.0043228191 0.531957525 0.78237837 9 93665686 93665760 75 + 0.651 0.729 0.324
ENSG00000197724 E028 2.9778543 0.0069771844 0.674793025 0.86528085 9 93665761 93665798 38 + 0.548 0.605 0.259
ENSG00000197724 E029 5.6422621 0.0174890911 0.185105332 0.46269032 9 93665799 93665864 66 + 0.901 0.744 -0.615
ENSG00000197724 E030 4.8963082 0.0059530770 0.115622581 0.35848104 9 93665990 93666060 71 + 0.865 0.680 -0.740
ENSG00000197724 E031 1.4625079 0.0095706764 0.149195320 0.41142757 9 93667077 93667079 3 + 0.507 0.289 -1.226
ENSG00000197724 E032 7.0249736 0.0020893331 0.479437508 0.74518682 9 93667080 93667240 161 + 0.934 0.860 -0.281
ENSG00000197724 E033 0.5067220 0.0415105824 0.138149798 0.39553268 9 93673481 93673584 104 + 0.000 0.245 10.560
ENSG00000197724 E034 12.0567544 0.0015492465 0.113657791 0.35487865 9 93673585 93673779 195 + 1.008 1.142 0.489
ENSG00000197724 E035 5.4714285 0.0261825615 0.328085608 0.62058401 9 93673780 93673789 10 + 0.709 0.837 0.513
ENSG00000197724 E036 7.8012675 0.0087400240 0.682973835 0.86866227 9 93673790 93673862 73 + 0.901 0.943 0.158
ENSG00000197724 E037 6.0508390 0.0022540648 0.857857376 0.95043756 9 93674927 93675022 96 + 0.846 0.825 -0.082
ENSG00000197724 E038 1.9775369 0.0071095509 0.998826377 1.00000000 9 93675680 93675683 4 + 0.462 0.461 -0.004
ENSG00000197724 E039 5.0785858 0.0047829740 0.658798469 0.85746505 9 93675684 93675789 106 + 0.735 0.786 0.207
ENSG00000197724 E040 16.1679151 0.0217067177 0.709604730 0.88250885 9 93676594 93676963 370 + 1.242 1.203 -0.137
ENSG00000197724 E041 134.8947519 0.0001742746 0.001584143 0.02133158 9 93677588 93679587 2000 + 2.073 2.137 0.212

Help

Please Click HERE to learn more details about the results from DEXseq.