ENSG00000198039

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000395375 ENSG00000198039 No_inf pgKDN_inf ZNF273 protein_coding nonsense_mediated_decay 5.110207 8.406695 3.91319 0.8532955 0.3593151 -1.101227 1.6692181 2.5638301 1.5425505 0.89109111 0.5153501 -0.7292766 0.34990833 0.287250 0.416800 0.129550 0.8750581128 0.0006278762 FALSE TRUE
ENST00000476120 ENSG00000198039 No_inf pgKDN_inf ZNF273 protein_coding protein_coding 5.110207 8.406695 3.91319 0.8532955 0.3593151 -1.101227 0.8606257 1.3827526 0.5478651 0.99976035 0.5478651 -1.3199509 0.17062500 0.199775 0.129075 -0.070700 0.8987838015 0.0006278762 FALSE TRUE
ENST00000489672 ENSG00000198039 No_inf pgKDN_inf ZNF273 protein_coding protein_coding_CDS_not_defined 5.110207 8.406695 3.91319 0.8532955 0.3593151 -1.101227 1.1878029 1.1075374 1.5101361 0.46077242 0.2255529 0.4438775 0.26519167 0.121325 0.379075 0.257750 0.2110772632 0.0006278762   FALSE
ENST00000527278 ENSG00000198039 No_inf pgKDN_inf ZNF273 protein_coding protein_coding_CDS_not_defined 5.110207 8.406695 3.91319 0.8532955 0.3593151 -1.101227 0.2549879 0.1287895 0.2370376 0.07982753 0.1551024 0.8318323 0.06771667 0.013050 0.052350 0.039300 0.7232940410 0.0006278762 FALSE TRUE
MSTRG.26236.5 ENSG00000198039 No_inf pgKDN_inf ZNF273 protein_coding   5.110207 8.406695 3.91319 0.8532955 0.3593151 -1.101227 0.9199735 2.7599206 0.0000000 0.48645204 0.0000000 -8.1137008 0.10774167 0.323225 0.000000 -0.323225 0.0006278762 0.0006278762   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000198039 E001 0.0000000       7 64870172 64870381 210 +      
ENSG00000198039 E002 0.0000000       7 64877660 64877874 215 +      
ENSG00000198039 E003 0.0000000       7 64878381 64878495 115 +      
ENSG00000198039 E004 0.0000000       7 64879450 64880239 790 +      
ENSG00000198039 E005 0.0000000       7 64882493 64882512 20 +      
ENSG00000198039 E006 0.0000000       7 64882513 64882785 273 +      
ENSG00000198039 E007 0.4975013 0.016272461 0.7961445855   7 64888573 64889855 1283 + 0.126 0.186 0.669
ENSG00000198039 E008 0.8862431 0.400112494 0.1626897284 0.431290313 7 64893378 64893411 34 + 0.000 0.351 12.192
ENSG00000198039 E009 1.2674957 0.054534602 0.0153633391 0.106861792 7 64893412 64893456 45 + 0.000 0.444 12.833
ENSG00000198039 E010 1.1410533 0.182655394 0.0424951862 0.200870760 7 64893457 64893638 182 + 0.000 0.415 12.605
ENSG00000198039 E011 1.5244426 0.009098228 0.0049410713 0.049195447 7 64893748 64893897 150 + 0.000 0.497 13.079
ENSG00000198039 E012 4.1550298 0.005533958 0.0062227761 0.057945305 7 64897348 64898054 707 + 0.370 0.790 1.942
ENSG00000198039 E013 0.0000000       7 64903253 64903272 20 +      
ENSG00000198039 E014 0.4903851 0.015867599 0.4699161197   7 64903273 64903287 15 + 0.223 0.132 -0.916
ENSG00000198039 E015 0.7440284 0.013378136 0.9690813550 0.993641226 7 64903288 64903366 79 + 0.223 0.234 0.084
ENSG00000198039 E016 0.7615290 0.013304623 0.0738721555 0.276874276 7 64903367 64903419 53 + 0.000 0.316 12.311
ENSG00000198039 E017 1.4930357 0.010308682 0.5717825435 0.807904422 7 64917030 64917118 89 + 0.303 0.416 0.669
ENSG00000198039 E018 2.9861951 0.005324680 0.7261803856 0.890384707 7 64917581 64917707 127 + 0.526 0.605 0.364
ENSG00000198039 E019 4.1937640 0.026893595 0.3072298485 0.600454220 7 64918197 64918292 96 + 0.757 0.659 -0.402
ENSG00000198039 E020 6.6954684 0.016960833 0.0001797793 0.003830982 7 64923386 64924431 1046 + 1.070 0.707 -1.393
ENSG00000198039 E021 54.0310554 0.012404703 0.4662287521 0.734999823 7 64927654 64931001 3348 + 1.703 1.720 0.059

Help

Please Click HERE to learn more details about the results from DEXseq.