ENSG00000198168

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000354193 ENSG00000198168 No_inf pgKDN_inf SVIP protein_coding protein_coding 10.18866 12.27967 10.49185 2.233346 0.8189913 -0.2268028 1.5034400 1.8672438 1.6252021 0.09934775 0.1038395 -0.1991470 0.15537500 0.163500 0.160150 -0.003350 1.00000000 0.03543117   FALSE
ENST00000525670 ENSG00000198168 No_inf pgKDN_inf SVIP protein_coding protein_coding_CDS_not_defined 10.18866 12.27967 10.49185 2.233346 0.8189913 -0.2268028 0.7536457 1.4358736 0.3554088 0.50950940 0.2053335 -1.9843580 0.06702500 0.111525 0.031575 -0.079950 0.61039123 0.03543117   FALSE
ENST00000529848 ENSG00000198168 No_inf pgKDN_inf SVIP protein_coding protein_coding_CDS_not_defined 10.18866 12.27967 10.49185 2.233346 0.8189913 -0.2268028 0.9559836 2.8679508 0.0000000 2.86795075 0.0000000 -8.1688981 0.05100000 0.153000 0.000000 -0.153000 0.85212210 0.03543117   FALSE
ENST00000530199 ENSG00000198168 No_inf pgKDN_inf SVIP protein_coding protein_coding_CDS_not_defined 10.18866 12.27967 10.49185 2.233346 0.8189913 -0.2268028 0.5882945 0.7577654 0.2392893 0.75776536 0.2392893 -1.6228446 0.06781667 0.064325 0.021000 -0.043325 1.00000000 0.03543117   FALSE
ENST00000533774 ENSG00000198168 No_inf pgKDN_inf SVIP protein_coding protein_coding_CDS_not_defined 10.18866 12.27967 10.49185 2.233346 0.8189913 -0.2268028 1.4964476 0.2292821 2.4276385 0.22928206 0.4493627 3.3487001 0.16006667 0.024975 0.230600 0.205625 0.03543117 0.03543117   FALSE
MSTRG.4531.3 ENSG00000198168 No_inf pgKDN_inf SVIP protein_coding   10.18866 12.27967 10.49185 2.233346 0.8189913 -0.2268028 4.8908501 5.1215554 5.8443114 0.80564244 0.6353837 0.1901033 0.49869167 0.482650 0.556625 0.073975 0.86166299 0.03543117   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000198168 E001 1.7587303 0.009551515 0.008316646 0.07098433 11 22813799 22814066 268 - 0.178 0.583 2.480
ENSG00000198168 E002 2.3825830 0.027336255 0.004917931 0.04899219 11 22818927 22820033 1107 - 0.246 0.679 2.310
ENSG00000198168 E003 0.1272623 0.012465819 0.588129151   11 22820034 22820191 158 - 0.000 0.092 11.244
ENSG00000198168 E004 0.7516764 0.194641185 0.172104119 0.44480889 11 22820192 22820336 145 - 0.098 0.338 2.217
ENSG00000198168 E005 25.0387370 0.000692924 0.821232628 0.93507208 11 22820337 22822746 2410 - 1.404 1.423 0.065
ENSG00000198168 E006 6.0875865 0.002385252 0.137323753 0.39449496 11 22822747 22822866 120 - 0.922 0.775 -0.571
ENSG00000198168 E007 9.6202707 0.001577211 0.051200209 0.22407675 11 22822867 22823029 163 - 1.103 0.944 -0.584
ENSG00000198168 E008 8.9374524 0.001710558 0.598859918 0.82404311 11 22823030 22823133 104 - 1.017 0.978 -0.144
ENSG00000198168 E009 8.1084494 0.008098901 0.714393690 0.88491888 11 22827207 22827244 38 - 0.935 0.978 0.158
ENSG00000198168 E010 9.7235279 0.001731412 0.382359363 0.66859583 11 22827245 22827320 76 - 0.984 1.065 0.299
ENSG00000198168 E011 7.5873050 0.002272086 0.530712125 0.78163231 11 22827824 22827874 51 - 0.960 0.907 -0.198
ENSG00000198168 E012 0.1187032 0.011955025 0.490900710   11 22827875 22827877 3 - 0.098 0.000 -11.917
ENSG00000198168 E013 0.2545247 0.225147955 0.324702552   11 22829257 22829294 38 - 0.000 0.168 11.864
ENSG00000198168 E014 0.2545247 0.225147955 0.324702552   11 22829295 22829694 400 - 0.000 0.168 11.864
ENSG00000198168 E015 8.6797586 0.001709244 0.443518969 0.71834090 11 22829695 22829814 120 - 1.017 0.955 -0.227
ENSG00000198168 E016 0.0000000       11 22830164 22830299 136 -      

Help

Please Click HERE to learn more details about the results from DEXseq.