ENSG00000198520

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000418779 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding retained_intron 31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 3.5390523 5.197113 2.5569295 1.7004025 1.7285445 -1.0204402 0.10648333 0.148150 0.095450 -0.052700 0.73266661 0.02843781 FALSE TRUE
ENST00000427321 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding retained_intron 31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 0.6366727 0.000000 1.9100181 0.0000000 1.9100181 7.5849761 0.02190000 0.000000 0.065700 0.065700 0.82140699 0.02843781   FALSE
ENST00000427336 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding retained_intron 31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 1.0656000 0.000000 1.5705774 0.0000000 0.6336362 7.3043078 0.03876667 0.000000 0.070900 0.070900 0.03678724 0.02843781   FALSE
ENST00000568406 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding retained_intron 31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 2.7995554 6.530584 0.5708253 2.3820377 0.5708253 -3.4932431 0.08442500 0.197975 0.023550 -0.174425 0.27965516 0.02843781 TRUE TRUE
MSTRG.884.17 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 1.4552124 1.202243 1.0387233 1.2022427 1.0387233 -0.2090445 0.05072500 0.037000 0.053075 0.016075 0.99207394 0.02843781 TRUE TRUE
MSTRG.884.18 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 4.7710350 3.686292 4.0828924 2.9536289 2.3759004 0.1470420 0.15398333 0.099175 0.174800 0.075625 0.93307197 0.02843781 FALSE TRUE
MSTRG.884.19 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 3.8017014 6.009289 0.0000000 2.1098747 0.0000000 -9.2334493 0.10846667 0.181800 0.000000 -0.181800 0.02843781 0.02843781 FALSE TRUE
MSTRG.884.20 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 3.4846518 3.434170 1.4502873 2.3975130 1.4502873 -1.2379040 0.10261667 0.093575 0.049900 -0.043675 0.83600509 0.02843781 TRUE TRUE
MSTRG.884.21 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 1.3848281 0.000000 2.7622723 0.0000000 1.7082785 8.1149251 0.05487500 0.000000 0.123850 0.123850 0.43195452 0.02843781 FALSE TRUE
MSTRG.884.22 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 0.4256172 0.000000 1.2768515 0.0000000 1.2768515 7.0077018 0.01901667 0.000000 0.057050 0.057050 0.82818222 0.02843781 FALSE TRUE
MSTRG.884.24 ENSG00000198520 No_inf pgKDN_inf ARMH1 protein_coding   31.09253 34.30306 23.81595 1.31919 1.996168 -0.5262239 4.7286084 3.709975 4.1628228 0.2467938 1.0336820 0.1657306 0.15573333 0.108625 0.168775 0.060150 0.71952014 0.02843781 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000198520 E001 0.0000000       1 44674692 44674712 21 +      
ENSG00000198520 E002 0.0000000       1 44674713 44674713 1 +      
ENSG00000198520 E003 0.0000000       1 44674714 44674721 8 +      
ENSG00000198520 E004 0.0000000       1 44674722 44674725 4 +      
ENSG00000198520 E005 0.0000000       1 44674726 44674738 13 +      
ENSG00000198520 E006 0.0000000       1 44674739 44674754 16 +      
ENSG00000198520 E007 0.0000000       1 44674755 44674757 3 +      
ENSG00000198520 E008 0.1272623 0.0123750669 0.910681116   1 44674758 44674779 22 + 0.000 0.077 9.608
ENSG00000198520 E009 0.2537694 0.0161316369 0.453551089   1 44674780 44674873 94 + 0.000 0.143 12.820
ENSG00000198520 E010 0.0000000       1 44684393 44684656 264 +      
ENSG00000198520 E011 0.1271363 0.0123956054 0.910639989   1 44685334 44685457 124 + 0.000 0.077 11.915
ENSG00000198520 E012 0.0000000       1 44688196 44688319 124 +      
ENSG00000198520 E013 0.0000000       1 44689109 44689224 116 +      
ENSG00000198520 E014 0.1265070 0.0124358004 0.910605222   1 44689676 44689741 66 + 0.000 0.077 11.915
ENSG00000198520 E015 0.0000000       1 44689742 44689833 92 +      
ENSG00000198520 E016 0.0000000       1 44689834 44689874 41 +      
ENSG00000198520 E017 0.0000000       1 44689875 44689903 29 +      
ENSG00000198520 E018 0.0000000       1 44692928 44693020 93 +      
ENSG00000198520 E019 0.2537079 0.2170351997 0.507708842   1 44697102 44697170 69 + 0.000 0.143 12.557
ENSG00000198520 E020 0.5081066 0.0156906131 0.124197782 0.37340824 1 44698063 44698229 167 + 0.000 0.250 13.689
ENSG00000198520 E021 0.3805619 0.5137614016 0.474687098   1 44700923 44700972 50 + 0.000 0.200 12.833
ENSG00000198520 E022 0.3810317 0.0267395498 0.234771426   1 44700973 44701119 147 + 0.000 0.200 13.317
ENSG00000198520 E023 0.4986650 0.0219771735 0.599429478   1 44704089 44704170 82 + 0.117 0.200 0.921
ENSG00000198520 E024 0.2441403 0.0162429140 0.713460718   1 44704171 44704173 3 + 0.117 0.077 -0.664
ENSG00000198520 E025 0.2441403 0.0162429140 0.713460718   1 44723713 44723732 20 + 0.117 0.077 -0.664
ENSG00000198520 E026 0.4814816 0.0154224199 0.142950893   1 44723733 44723748 16 + 0.284 0.077 -2.249
ENSG00000198520 E027 0.7352509 0.0135991264 0.567832963 0.80551903 1 44723749 44723763 15 + 0.284 0.200 -0.664
ENSG00000198520 E028 0.9793912 0.0122991993 0.511066005 0.76836965 1 44723764 44723784 21 + 0.349 0.250 -0.664
ENSG00000198520 E029 2.3405331 0.0066124580 0.744157283 0.89873493 1 44723785 44723791 7 + 0.540 0.497 -0.204
ENSG00000198520 E030 2.3310274 0.0061423236 0.431472141 0.70922280 1 44723792 44723794 3 + 0.577 0.469 -0.512
ENSG00000198520 E031 3.0755938 0.0045783877 0.570308529 0.80697593 1 44723795 44723802 8 + 0.642 0.571 -0.316
ENSG00000198520 E032 6.4035772 0.0020927333 0.564079781 0.80333445 1 44723803 44723830 28 + 0.891 0.835 -0.216
ENSG00000198520 E033 6.5203902 0.0021321441 0.457633182 0.72947671 1 44723831 44723843 13 + 0.908 0.835 -0.281
ENSG00000198520 E034 9.7178120 0.0014783390 0.280560616 0.57391171 1 44723844 44723906 63 + 1.071 0.980 -0.334
ENSG00000198520 E035 0.5917516 0.0490357944 0.005607016 0.05382855 1 44723907 44723984 78 + 0.405 0.000 -15.683
ENSG00000198520 E036 1.4882532 0.0100575588 0.719140915 0.88680749 1 44723985 44724121 137 + 0.349 0.408 0.336
ENSG00000198520 E037 7.5841202 0.0021798644 0.064668677 0.25637493 1 44724122 44724165 44 + 1.023 0.847 -0.664
ENSG00000198520 E038 13.2579277 0.0011857019 0.135783696 0.39170720 1 44724166 44724244 79 + 1.207 1.096 -0.396
ENSG00000198520 E039 1.4792830 0.0089710970 0.817613211 0.93361564 1 44724245 44724319 75 + 0.405 0.373 -0.178
ENSG00000198520 E040 8.2428154 0.0037869395 0.418731698 0.69843437 1 44724320 44724336 17 + 0.997 0.924 -0.274
ENSG00000198520 E041 9.9503757 0.0034792542 0.186974763 0.46486099 1 44724337 44724372 36 + 1.093 0.980 -0.414
ENSG00000198520 E042 7.9678560 0.0022477133 0.076104330 0.28191039 1 44724373 44724392 20 + 1.036 0.870 -0.620
ENSG00000198520 E043 9.7370695 0.0019586472 0.703288357 0.87921641 1 44724393 44724506 114 + 1.036 1.006 -0.109
ENSG00000198520 E044 3.3450401 0.0699165795 0.674832623 0.86528085 1 44724507 44724520 14 + 0.577 0.653 0.336
ENSG00000198520 E045 4.3066484 0.0258628503 0.622441016 0.83732729 1 44724521 44724538 18 + 0.750 0.689 -0.249
ENSG00000198520 E046 16.2098808 0.0010164217 0.543815476 0.79054861 1 44724539 44724668 130 + 1.190 1.239 0.174
ENSG00000198520 E047 4.9045280 0.0031080527 0.245075842 0.53550705 1 44724669 44724761 93 + 0.836 0.706 -0.519
ENSG00000198520 E048 7.9445689 0.0018873724 0.232001534 0.52073622 1 44724762 44724773 12 + 0.855 0.980 0.474
ENSG00000198520 E049 19.0612845 0.0007720007 0.379613212 0.66624249 1 44724774 44724839 66 + 1.246 1.311 0.225
ENSG00000198520 E050 20.1821113 0.0007999722 0.352724900 0.64276328 1 44724840 44725032 193 + 1.269 1.335 0.231
ENSG00000198520 E051 20.4744642 0.0158235077 0.172528140 0.44532820 1 44725033 44725135 103 + 1.239 1.358 0.416
ENSG00000198520 E052 23.7642753 0.0006889617 0.297932831 0.59094907 1 44725136 44725217 82 + 1.335 1.403 0.236
ENSG00000198520 E053 33.9539639 0.0028242794 0.101030188 0.33190974 1 44725291 44725591 301 + 1.468 1.561 0.320

Help

Please Click HERE to learn more details about the results from DEXseq.