ENSG00000198792

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000361906 ENSG00000198792 No_inf pgKDN_inf TMEM184B protein_coding protein_coding 48.63276 25.7028 56.5316 0.8387138 0.7493918 1.136826 39.763578 17.569026 49.803212 0.8717029 3.5989540 1.5026733 0.79400000 0.684375 0.882000 0.197625 0.04066669 0.01405456 FALSE TRUE
ENST00000633056 ENSG00000198792 No_inf pgKDN_inf TMEM184B protein_coding retained_intron 48.63276 25.7028 56.5316 0.8387138 0.7493918 1.136826 2.454292 3.217941 1.467742 0.2565143 0.2533811 -1.1272196 0.06459167 0.125850 0.025875 -0.099975 0.01405456 0.01405456 FALSE TRUE
MSTRG.19390.2 ENSG00000198792 No_inf pgKDN_inf TMEM184B protein_coding   48.63276 25.7028 56.5316 0.8387138 0.7493918 1.136826 4.065184 1.981617 3.941019 1.1746083 3.9410193 0.9882843 0.08115000 0.076300 0.068725 -0.007575 0.73970181 0.01405456 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000198792 E001 0.3614886 0.0163672296 1.000000e+00   22 38219291 38219308 18 - 0.127 0.131 0.042
ENSG00000198792 E002 0.6152580 0.0147104691 2.158005e-01 5.017236e-01 22 38219309 38219311 3 - 0.127 0.313 1.627
ENSG00000198792 E003 0.9880774 0.0119820408 8.861182e-02 3.087731e-01 22 38219312 38219323 12 - 0.179 0.440 1.779
ENSG00000198792 E004 3.4897842 0.0314041030 5.832326e-01 8.143966e-01 22 38219324 38219339 16 - 0.661 0.581 -0.350
ENSG00000198792 E005 66.2424364 0.0031276841 3.312583e-01 6.235328e-01 22 38219340 38219624 285 - 1.790 1.833 0.144
ENSG00000198792 E006 42.5239751 0.0009002913 5.578267e-01 7.996622e-01 22 38219625 38219719 95 - 1.626 1.598 -0.095
ENSG00000198792 E007 285.9518285 0.0040364785 8.231029e-01 9.356648e-01 22 38219720 38220974 1255 - 2.437 2.433 -0.014
ENSG00000198792 E008 59.3610735 0.0002558189 1.661253e-01 4.362294e-01 22 38220975 38221144 170 - 1.777 1.721 -0.189
ENSG00000198792 E009 130.5396505 0.0021288304 6.239106e-01 8.381696e-01 22 38221145 38221710 566 - 2.102 2.087 -0.049
ENSG00000198792 E010 1.4947678 0.1777490691 1.932282e-02 1.242175e-01 22 38221711 38221746 36 - 0.179 0.619 2.628
ENSG00000198792 E011 11.7643390 0.0012113786 1.199231e-10 1.186776e-08 22 38221747 38222641 895 - 0.821 1.358 1.952
ENSG00000198792 E012 0.8358878 0.0230865776 2.792528e-01 5.725176e-01 22 38222642 38222662 21 - 0.306 0.131 -1.543
ENSG00000198792 E013 15.8254064 0.0008787844 2.290340e-21 7.018592e-19 22 38222663 38224103 1441 - 0.821 1.532 2.552
ENSG00000198792 E014 44.8031383 0.0003435168 1.839111e-02 1.199257e-01 22 38224785 38224979 195 - 1.674 1.562 -0.382
ENSG00000198792 E015 29.6225773 0.0081604801 1.385672e-01 3.958621e-01 22 38225424 38225519 96 - 1.496 1.396 -0.346
ENSG00000198792 E016 26.7814991 0.0181950148 5.176353e-01 7.730988e-01 22 38225520 38225577 58 - 1.438 1.390 -0.168
ENSG00000198792 E017 16.7384365 0.0590838626 4.022978e-01 6.854810e-01 22 38225578 38225593 16 - 1.256 1.167 -0.316
ENSG00000198792 E018 0.8703817 0.0131078805 3.837110e-02 1.891515e-01 22 38226380 38226598 219 - 0.127 0.440 2.364
ENSG00000198792 E019 1.7324844 0.0084322983 1.722865e-02 1.148591e-01 22 38226599 38226778 180 - 0.268 0.619 1.890
ENSG00000198792 E020 25.0524329 0.0015577455 6.363706e-01 8.448856e-01 22 38226779 38226870 92 - 1.384 1.414 0.104
ENSG00000198792 E021 18.0088824 0.0008009342 7.591437e-01 9.054275e-01 22 38230669 38230717 49 - 1.265 1.243 -0.076
ENSG00000198792 E022 15.1891992 0.0009536468 2.321052e-01 5.208172e-01 22 38230718 38230744 27 - 1.218 1.124 -0.336
ENSG00000198792 E023 13.1203107 0.0011611033 1.119308e-01 3.514308e-01 22 38231244 38231330 87 - 1.171 1.035 -0.490
ENSG00000198792 E024 0.0000000       22 38231331 38231334 4 -      
ENSG00000198792 E025 0.0000000       22 38231335 38231399 65 -      
ENSG00000198792 E026 0.1271363 0.0123078147 2.464948e-01   22 38231400 38231456 57 - 0.000 0.131 10.798
ENSG00000198792 E027 0.1272623 0.0123102538 2.465408e-01   22 38239406 38239502 97 - 0.000 0.131 10.798
ENSG00000198792 E028 20.9729366 0.0034773101 3.581758e-01 6.476633e-01 22 38245935 38246100 166 - 1.342 1.277 -0.228
ENSG00000198792 E029 0.0000000       22 38246594 38246715 122 -      
ENSG00000198792 E030 0.0000000       22 38246716 38246784 69 -      
ENSG00000198792 E031 0.0000000       22 38246785 38246805 21 -      
ENSG00000198792 E032 0.1272623 0.0123102538 2.465408e-01   22 38246806 38246885 80 - 0.000 0.131 10.798
ENSG00000198792 E033 31.6771237 0.0004600437 8.005537e-02 2.904763e-01 22 38247770 38248019 250 - 1.524 1.426 -0.338
ENSG00000198792 E034 0.3628408 0.0164013996 1.000000e+00   22 38272499 38272883 385 - 0.127 0.131 0.042
ENSG00000198792 E035 9.7984483 0.0015029205 9.059204e-01 9.700033e-01 22 38272884 38273010 127 - 1.016 1.006 -0.039

Help

Please Click HERE to learn more details about the results from DEXseq.