ENSG00000198815

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000361776 ENSG00000198815 No_inf pgKDN_inf FOXJ3 protein_coding protein_coding 71.66329 88.84912 66.69393 0.5944268 1.118691 -0.4137479 25.890674 25.19935 29.705265 1.9920672 2.7568299 0.2372455 0.37053333 0.283400 0.445825 0.162425 0.12096543 0.01023813 FALSE TRUE
ENST00000372571 ENSG00000198815 No_inf pgKDN_inf FOXJ3 protein_coding protein_coding 71.66329 88.84912 66.69393 0.5944268 1.118691 -0.4137479 6.754422 14.35381 3.083402 0.7468586 0.7575922 -2.2151717 0.08484167 0.161500 0.045875 -0.115625 0.01023813 0.01023813 FALSE TRUE
MSTRG.817.7 ENSG00000198815 No_inf pgKDN_inf FOXJ3 protein_coding   71.66329 88.84912 66.69393 0.5944268 1.118691 -0.4137479 31.023700 35.83782 28.554042 3.2844972 3.1665168 -0.3276851 0.43856667 0.403925 0.428450 0.024525 0.93267638 0.01023813 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000198815 E001 0.8677990 0.2467877491 6.563559e-01 8.561454e-01 1 42176539 42176544 6 - 0.199 0.307 0.819
ENSG00000198815 E002 0.9946530 0.1028926691 3.977714e-01 6.818797e-01 1 42176545 42176547 3 - 0.199 0.349 1.082
ENSG00000198815 E003 1.7475614 0.0502452297 1.498525e-01 4.123122e-01 1 42176548 42176551 4 - 0.273 0.513 1.371
ENSG00000198815 E004 1543.6229792 0.0001518354 7.413225e-14 1.123104e-11 1 42176552 42179825 3274 - 3.157 3.193 0.118
ENSG00000198815 E005 51.8263383 0.0002809401 4.651257e-01 7.343486e-01 1 42181917 42182024 108 - 1.730 1.702 -0.096
ENSG00000198815 E006 63.3792541 0.0002832016 3.430873e-01 6.344242e-01 1 42188737 42188928 192 - 1.819 1.786 -0.114
ENSG00000198815 E007 3.3421110 0.0051333254 6.607112e-01 8.584009e-01 1 42188929 42189302 374 - 0.593 0.653 0.262
ENSG00000198815 E008 36.5618510 0.0007336026 6.812583e-01 8.682781e-01 1 42189303 42189404 102 - 1.577 1.558 -0.063
ENSG00000198815 E009 9.6295777 0.0019866400 1.744532e-04 3.739649e-03 1 42189405 42189809 405 - 0.753 1.132 1.427
ENSG00000198815 E010 36.2444416 0.0003619397 8.850441e-01 9.613124e-01 1 42191303 42191405 103 - 1.556 1.566 0.033
ENSG00000198815 E011 76.8313761 0.0021277272 1.225074e-02 9.162004e-02 1 42191406 42191719 314 - 1.936 1.842 -0.319
ENSG00000198815 E012 41.8977008 0.0003240028 1.632989e-03 2.184848e-02 1 42194890 42194996 107 - 1.704 1.561 -0.486
ENSG00000198815 E013 37.5707782 0.0004448170 7.824963e-04 1.240540e-02 1 42194997 42195064 68 - 1.667 1.506 -0.550
ENSG00000198815 E014 42.4913679 0.0003355559 2.913881e-06 1.174568e-04 1 42199102 42199230 129 - 1.744 1.533 -0.719
ENSG00000198815 E015 23.1405535 0.0226209567 6.924264e-02 2.659086e-01 1 42205762 42205863 102 - 1.458 1.308 -0.519
ENSG00000198815 E016 0.3806233 0.0158686120 1.915559e-01   1 42205864 42206011 148 - 0.000 0.209 11.371
ENSG00000198815 E017 25.6462750 0.0005343950 2.730952e-04 5.385417e-03 1 42227883 42227966 84 - 1.531 1.321 -0.724
ENSG00000198815 E018 1.1352597 0.0191727105 5.044318e-02 2.219270e-01 1 42264931 42265114 184 - 0.111 0.422 2.497
ENSG00000198815 E019 25.2164831 0.0134165979 3.353899e-02 1.742683e-01 1 42265115 42265189 75 - 1.500 1.338 -0.560
ENSG00000198815 E020 62.5699411 0.0075273045 3.172793e-02 1.682941e-01 1 42278348 42278672 325 - 1.858 1.746 -0.379
ENSG00000198815 E021 3.1126046 0.0105717974 1.808723e-01 4.566097e-01 1 42278673 42278784 112 - 0.483 0.672 0.859
ENSG00000198815 E022 13.0784371 0.0010320636 1.312899e-02 9.598736e-02 1 42311050 42311110 61 - 1.246 1.052 -0.692
ENSG00000198815 E023 0.1265070 0.0122992037 7.696370e-01   1 42311111 42311174 64 - 0.000 0.081 9.852
ENSG00000198815 E024 0.7512680 0.0302153301 2.096522e-01 4.941007e-01 1 42315346 42315455 110 - 0.111 0.307 1.819
ENSG00000198815 E025 0.5063750 0.1965529299 1.427436e-01 4.021284e-01 1 42315456 42315459 4 - 0.000 0.261 11.106
ENSG00000198815 E026 0.3711203 0.0165906619 8.276924e-01   1 42323684 42323827 144 - 0.111 0.150 0.497
ENSG00000198815 E027 1.1245559 0.0136538090 2.344573e-01 5.235282e-01 1 42334925 42334965 41 - 0.199 0.387 1.304
ENSG00000198815 E028 15.2093068 0.0017970011 1.625078e-01 4.309516e-01 1 42335059 42335235 177 - 1.260 1.157 -0.364
ENSG00000198815 E029 7.1148259 0.0401250564 1.935299e-02 1.243044e-01 1 42335626 42335877 252 - 0.680 1.002 1.256

Help

Please Click HERE to learn more details about the results from DEXseq.