ENSG00000198947

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000378723 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding protein_coding 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 1.5079858 0.0000000 2.6750670 0.00000000 0.57020791 8.0688143 0.25792500 0.00000 0.416300 0.416300 0.0141629 0.0141629 FALSE TRUE
ENST00000679482 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding retained_intron 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 0.5836733 0.2839665 0.7495078 0.10555779 0.45395939 1.3694130 0.14305000 0.21490 0.112225 -0.102675 0.8346783 0.0141629   FALSE
ENST00000679669 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding retained_intron 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 0.4525986 0.2841448 0.7553345 0.28414478 0.43853122 1.3795639 0.09572500 0.13115 0.118775 -0.012375 1.0000000 0.0141629   FALSE
ENST00000681654 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding retained_intron 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 0.0378158 0.1134474 0.0000000 0.11344739 0.00000000 -3.6258245 0.02448333 0.07345 0.000000 -0.073450 0.4888787 0.0141629 FALSE TRUE
ENST00000682135 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding retained_intron 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 0.1798399 0.2242819 0.1423671 0.09664298 0.02464893 -0.6206941 0.05856667 0.12200 0.023525 -0.098475 0.4461937 0.0141629   FALSE
ENST00000682600 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding protein_coding 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 0.4536068 0.1997427 0.7338483 0.12544910 0.73384831 1.8263878 0.12843333 0.15935 0.138150 -0.021200 0.7665956 0.0141629 FALSE TRUE
ENST00000683309 ENSG00000198947 No_inf pgKDN_inf DMD protein_coding protein_coding_CDS_not_defined 4.623751 1.551202 6.28111 0.2611531 0.3826369 2.010657 0.3416437 0.3143446 0.2529275 0.08412335 0.09372628 -0.3028625 0.11430833 0.22550 0.043500 -0.182000 0.2826854 0.0141629 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000198947 E001 0.0000000       X 31097677 31098183 507 -      
ENSG00000198947 E002 0.0000000       X 31119219 31119220 2 -      
ENSG00000198947 E003 0.0000000       X 31119221 31119221 1 -      
ENSG00000198947 E004 0.0000000       X 31119222 31119227 6 -      
ENSG00000198947 E005 0.1170040 0.012382036 0.559171205   X 31119228 31119237 10 - 0.043 0.000 -9.723
ENSG00000198947 E006 0.1170040 0.012382036 0.559171205   X 31119238 31119238 1 - 0.043 0.000 -11.534
ENSG00000198947 E007 0.1170040 0.012382036 0.559171205   X 31119239 31119240 2 - 0.043 0.000 -11.534
ENSG00000198947 E008 0.3526461 0.028671993 1.000000000   X 31119241 31119275 35 - 0.117 0.000 -12.644
ENSG00000198947 E009 0.9433251 0.012188643 0.436449699 0.712842289 X 31119276 31119301 26 - 0.261 0.000 -13.468
ENSG00000198947 E010 2.9936754 0.004733053 0.298926060 0.591838704 X 31119302 31119378 77 - 0.486 0.592 0.494
ENSG00000198947 E011 2.1689884 0.006588770 0.086073873 0.303902934 X 31119379 31119397 19 - 0.369 0.592 1.116
ENSG00000198947 E012 1.5717926 0.010232825 0.086402104 0.304555983 X 31119398 31119399 2 - 0.285 0.522 1.324
ENSG00000198947 E013 12.6197726 0.001382577 0.000271594 0.005363659 X 31119400 31119907 508 - 0.961 1.207 0.891
ENSG00000198947 E014 14.1671967 0.001105015 0.744111849 0.898734935 X 31119908 31120689 782 - 1.073 0.961 -0.413
ENSG00000198947 E015 1.7825477 0.017396571 0.483641010 0.748098377 X 31120690 31120767 78 - 0.388 0.199 -1.313
ENSG00000198947 E016 6.0852548 0.002551046 0.521026640 0.775180018 X 31120768 31121183 416 - 0.735 0.752 0.068
ENSG00000198947 E017 2.9677376 0.005410256 0.453677626 0.726395994 X 31121184 31121396 213 - 0.528 0.335 -1.029
ENSG00000198947 E018 1.6590940 0.008515860 0.543068448 0.790080214 X 31121397 31121481 85 - 0.369 0.199 -1.206
ENSG00000198947 E019 0.9531101 0.012159766 1.000000000 1.000000000 X 31121482 31121555 74 - 0.236 0.199 -0.313
ENSG00000198947 E020 1.7692004 0.007420315 0.115123358 0.357643792 X 31121556 31121672 117 - 0.406 0.000 -13.921
ENSG00000198947 E021 2.5990500 0.026130512 0.038890967 0.190894195 X 31121673 31121817 145 - 0.514 0.000 -14.178
ENSG00000198947 E022 2.3736387 0.060911938 0.285112880 0.578783524 X 31121818 31121930 113 - 0.471 0.199 -1.755
ENSG00000198947 E023 0.0000000       X 31121931 31121958 28 -      
ENSG00000198947 E024 1.5522873 0.008439579 0.776336866 0.914130928 X 31126642 31126673 32 - 0.329 0.335 0.035
ENSG00000198947 E025 0.2346346 0.016072987 1.000000000   X 31126674 31126797 124 - 0.081 0.000 -12.261
ENSG00000198947 E026 0.1176306 0.012505039 0.559226559   X 31126886 31127186 301 - 0.043 0.000 -11.534
ENSG00000198947 E027 0.0000000       X 31129927 31130141 215 -      
ENSG00000198947 E028 0.4729834 0.016475671 1.000000000   X 31130142 31134101 3960 - 0.150 0.000 -12.905
ENSG00000198947 E029 1.5451440 0.009319325 0.615543616 0.833158250 X 31134102 31134194 93 - 0.350 0.199 -1.091
ENSG00000198947 E030 0.0000000       X 31134195 31134689 495 -      
ENSG00000198947 E031 0.0000000       X 31138523 31138609 87 -      
ENSG00000198947 E032 1.0636624 0.011467080 0.352817116 0.642824125 X 31146291 31146354 64 - 0.285 0.000 -13.557
ENSG00000198947 E033 1.0609558 0.010984498 0.352326368 0.642384312 X 31146355 31146414 60 - 0.285 0.000 -13.557
ENSG00000198947 E034 0.0000000       X 31146415 31146683 269 -      
ENSG00000198947 E035 0.5895415 0.015384527 1.000000000 1.000000000 X 31147275 31147317 43 - 0.181 0.000 -13.094
ENSG00000198947 E036 2.1320412 0.006475248 0.332418621 0.624537340 X 31147318 31147518 201 - 0.440 0.199 -1.593
ENSG00000198947 E037 0.0000000       X 31147519 31148479 961 -      
ENSG00000198947 E038 2.3944620 0.006195860 0.354878512 0.644596964 X 31169443 31169585 143 - 0.423 0.522 0.494
ENSG00000198947 E039 0.8514007 0.013060933 0.046613021 0.211868081 X 31169586 31169601 16 - 0.150 0.438 2.079
ENSG00000198947 E040 0.0000000       X 31169602 31171039 1438 -      
ENSG00000198947 E041 1.9302927 0.007656130 0.051201875 0.224076754 X 31172348 31172413 66 - 0.329 0.592 1.357
ENSG00000198947 E042 0.0000000       X 31172414 31173538 1125 -      
ENSG00000198947 E043 1.9047673 0.007455504 1.000000000 1.000000000 X 31173539 31173604 66 - 0.388 0.335 -0.313
ENSG00000198947 E044 2.3685037 0.006027064 0.260579725 0.553115308 X 31173605 31177752 4148 - 0.471 0.199 -1.754
ENSG00000198947 E045 1.8879543 0.081546014 0.124994362 0.374899674 X 31177932 31177970 39 - 0.423 0.000 -13.956
ENSG00000198947 E046 0.2340080 0.284054324 1.000000000   X 31177971 31178227 257 - 0.081 0.000 -12.151
ENSG00000198947 E047 0.1170040 0.012382036 0.559171205   X 31178228 31178421 194 - 0.043 0.000 -11.534
ENSG00000198947 E048 0.0000000       X 31178422 31178570 149 -      
ENSG00000198947 E049 0.0000000       X 31178571 31178668 98 -      
ENSG00000198947 E050 2.8347428 0.005891976 0.026000151 0.149116563 X 31178669 31178805 137 - 0.541 0.000 -14.241
ENSG00000198947 E051 1.6649156 0.094461407 0.610292164 0.830666169 X 31180370 31180440 71 - 0.369 0.199 -1.207
ENSG00000198947 E052 1.4271285 0.009927220 0.700897368 0.878180196 X 31180441 31180481 41 - 0.329 0.199 -0.965
ENSG00000198947 E053 0.1170040 0.012382036 0.559171205   X 31180482 31182737 2256 - 0.043 0.000 -11.534
ENSG00000198947 E054 2.1441274 0.007124267 0.850654255 0.947114770 X 31182738 31182904 167 - 0.423 0.335 -0.506
ENSG00000198947 E055 0.0000000       X 31195095 31195645 551 -      
ENSG00000198947 E056 1.6630305 0.149417623 0.779399442 0.914998379 X 31203961 31204118 158 - 0.349 0.335 -0.089
ENSG00000198947 E057 0.7131611 0.325043603 0.654175977 0.854852497 X 31206582 31206609 28 - 0.180 0.199 0.174
ENSG00000198947 E058 1.0677522 0.012383102 1.000000000 1.000000000 X 31206610 31206667 58 - 0.261 0.199 -0.506
ENSG00000198947 E059 2.7410305 0.008371830 0.958983072 0.990326709 X 31209498 31209699 202 - 0.486 0.438 -0.243
ENSG00000198947 E060 0.0000000       X 31222421 31223046 626 -      
ENSG00000198947 E061 1.7830754 0.081439968 0.510888796 0.768264386 X 31223047 31223121 75 - 0.388 0.199 -1.314
ENSG00000198947 E062 0.0000000       X 31228954 31229037 84 -      
ENSG00000198947 E063 0.0000000       X 31237712 31240090 2379 -      
ENSG00000198947 E064 0.0000000       X 31240091 31240195 105 -      
ENSG00000198947 E065 0.0000000       X 31247694 31247768 75 -      
ENSG00000198947 E066 1.1846914 0.119491979 0.336148801 0.628047578 X 31260955 31261016 62 - 0.308 0.000 -13.620
ENSG00000198947 E067 0.1170040 0.012382036 0.559171205   X 31261108 31261729 622 - 0.043 0.000 -11.534
ENSG00000198947 E068 0.0000000       X 31261730 31261778 49 -      
ENSG00000198947 E069 0.3635961 0.018087396 0.266792011   X 31265443 31266184 742 - 0.081 0.199 1.494
ENSG00000198947 E070 1.0714663 0.011213585 1.000000000 1.000000000 X 31266810 31266971 162 - 0.261 0.199 -0.506
ENSG00000198947 E071 0.0000000       X 31323598 31323658 61 -      
ENSG00000198947 E072 0.0000000       X 31348556 31348634 79 -      
ENSG00000198947 E073 0.0000000       X 31435552 31435734 183 -      
ENSG00000198947 E074 0.0000000       X 31443879 31444480 602 -      
ENSG00000198947 E075 0.0000000       X 31444481 31444627 147 -      
ENSG00000198947 E076 0.0000000       X 31478106 31478374 269 -      
ENSG00000198947 E077 0.0000000       X 31478983 31479103 121 -      
ENSG00000198947 E078 0.0000000       X 31496788 31496944 157 -      
ENSG00000198947 E079 0.0000000       X 31507281 31507453 173 -      
ENSG00000198947 E080 0.0000000       X 31508208 31508481 274 -      
ENSG00000198947 E081 0.0000000       X 31627294 31627672 379 -      
ENSG00000198947 E082 0.0000000       X 31627673 31627862 190 -      
ENSG00000198947 E083 0.0000000       X 31657990 31658144 155 -      
ENSG00000198947 E084 0.0000000       X 31676886 31679374 2489 -      
ENSG00000198947 E085 0.0000000       X 31679375 31679379 5 -      
ENSG00000198947 E086 0.0000000       X 31679380 31679586 207 -      
ENSG00000198947 E087 0.0000000       X 31729631 31729685 55 -      
ENSG00000198947 E088 0.0000000       X 31729686 31729748 63 -      
ENSG00000198947 E089 0.0000000       X 31773960 31774192 233 -      
ENSG00000198947 E090 0.0000000       X 31819975 31820083 109 -      
ENSG00000198947 E091 0.0000000       X 31836718 31836819 102 -      
ENSG00000198947 E092 0.0000000       X 31862828 31863054 227 -      
ENSG00000198947 E093 0.0000000       X 31875188 31875373 186 -      
ENSG00000198947 E094 0.0000000       X 31927764 31929595 1832 -      
ENSG00000198947 E095 0.0000000       X 31929596 31929673 78 -      
ENSG00000198947 E096 0.0000000       X 31929674 31929745 72 -      
ENSG00000198947 E097 0.0000000       X 31932080 31932115 36 -      
ENSG00000198947 E098 0.0000000       X 31932116 31932227 112 -      
ENSG00000198947 E099 0.0000000       X 31932353 31932458 106 -      
ENSG00000198947 E100 0.0000000       X 31967328 31968338 1011 -      
ENSG00000198947 E101 0.0000000       X 31968339 31968514 176 -      
ENSG00000198947 E102 0.0000000       X 32155371 32155469 99 -      
ENSG00000198947 E103 0.0000000       X 32216916 32217063 148 -      
ENSG00000198947 E104 0.0000000       X 32287529 32287701 173 -      
ENSG00000198947 E105 0.0000000       X 32310082 32310276 195 -      
ENSG00000198947 E106 0.0000000       X 32342100 32342282 183 -      
ENSG00000198947 E107 0.0000000       X 32342631 32342850 220 -      
ENSG00000198947 E108 0.0000000       X 32343134 32343286 153 -      
ENSG00000198947 E109 0.0000000       X 32345943 32346080 138 -      
ENSG00000198947 E110 0.0000000       X 32348406 32348528 123 -      
ENSG00000198947 E111 0.0000000       X 32362788 32362958 171 -      
ENSG00000198947 E112 0.0000000       X 32364582 32364680 99 -      
ENSG00000198947 E113 0.0000000       X 32364681 32364710 30 -      
ENSG00000198947 E114 0.0000000       X 32365020 32365199 180 -      
ENSG00000198947 E115 0.1186381 0.012227880 0.558903227   X 32380510 32380680 171 - 0.043 0.000 -11.534
ENSG00000198947 E116 0.1186381 0.012227880 0.558903227   X 32386310 32386465 156 - 0.043 0.000 -11.534
ENSG00000198947 E117 0.0000000       X 32389501 32389674 174 -      
ENSG00000198947 E118 0.0000000       X 32390071 32390181 111 -      
ENSG00000198947 E119 0.0000000       X 32411752 32411913 162 -      
ENSG00000198947 E120 0.0000000       X 32412019 32412237 219 -      
ENSG00000198947 E121 0.0000000       X 32438241 32438390 150 -      
ENSG00000198947 E122 0.0000000       X 32441180 32441314 135 -      
ENSG00000198947 E123 0.0000000       X 32447799 32448455 657 -      
ENSG00000198947 E124 0.0000000       X 32448456 32448638 183 -      
ENSG00000198947 E125 0.0000000       X 32454662 32454832 171 -      
ENSG00000198947 E126 0.0000000       X 32463439 32463594 156 -      
ENSG00000198947 E127 0.0000000       X 32464586 32464699 114 -      
ENSG00000198947 E128 0.0000000       X 32468498 32468710 213 -      
ENSG00000198947 E129 0.0000000       X 32472164 32472309 146 -      
ENSG00000198947 E130 0.0000000       X 32484770 32484918 149 -      
ENSG00000198947 E131 0.0000000       X 32484919 32485099 181 -      
ENSG00000198947 E132 0.0000000       X 32491277 32491518 242 -      
ENSG00000198947 E133 0.0000000       X 32501755 32501842 88 -      
ENSG00000198947 E134 0.0000000       X 32516596 32518007 1412 -      
ENSG00000198947 E135 0.0000000       X 32518008 32518131 124 -      
ENSG00000198947 E136 0.0000000       X 32545159 32545334 176 -      
ENSG00000198947 E137 0.0000000       X 32565560 32565701 142 -      
ENSG00000198947 E138 0.0000000       X 32565702 32565752 51 -      
ENSG00000198947 E139 0.0000000       X 32565753 32565881 129 -      
ENSG00000198947 E140 0.0000000       X 32573258 32573529 272 -      
ENSG00000198947 E141 0.0000000       X 32573530 32573591 62 -      
ENSG00000198947 E142 0.0000000       X 32573592 32573610 19 -      
ENSG00000198947 E143 0.0000000       X 32573611 32573637 27 -      
ENSG00000198947 E144 0.0000000       X 32573745 32573846 102 -      
ENSG00000198947 E145 0.0000000       X 32595757 32595876 120 -      
ENSG00000198947 E146 0.0000000       X 32614303 32614453 151 -      
ENSG00000198947 E147 0.0000000       X 32644132 32644313 182 -      
ENSG00000198947 E148 0.0000000       X 32644964 32645152 189 -      
ENSG00000198947 E149 0.0000000       X 32697383 32697869 487 -      
ENSG00000198947 E150 0.0000000       X 32697870 32697998 129 -      
ENSG00000198947 E151 0.0000000       X 32698603 32699111 509 -      
ENSG00000198947 E152 0.0000000       X 32699112 32699293 182 -      
ENSG00000198947 E153 0.0000000       X 32803428 32804449 1022 -      
ENSG00000198947 E154 0.0000000       X 32807701 32808486 786 -      
ENSG00000198947 E155 0.0000000       X 32808487 32809409 923 -      
ENSG00000198947 E156 0.0000000       X 32809410 32809492 83 -      
ENSG00000198947 E157 0.0000000       X 32809493 32809611 119 -      
ENSG00000198947 E158 0.0000000       X 32816468 32816640 173 -      
ENSG00000198947 E159 0.0000000       X 32822270 32822275 6 -      
ENSG00000198947 E160 0.0000000       X 32822276 32823294 1019 -      
ENSG00000198947 E161 0.0000000       X 32823295 32823387 93 -      
ENSG00000198947 E162 0.0000000       X 32844783 32844860 78 -      
ENSG00000198947 E163 0.0000000       X 32849728 32849820 93 -      
ENSG00000198947 E164 0.0000000       X 32960208 32960347 140 -      
ENSG00000198947 E165 0.0000000       X 32974077 32975698 1622 -      
ENSG00000198947 E166 0.0000000       X 33019307 33020138 832 -      
ENSG00000198947 E167 0.0000000       X 33020139 33020185 47 -      
ENSG00000198947 E168 0.0000000       X 33020186 33020200 15 -      
ENSG00000198947 E169 0.0000000       X 33078186 33078347 162 -      
ENSG00000198947 E170 0.0000000       X 33085901 33085927 27 -      
ENSG00000198947 E171 0.0000000       X 33128063 33128146 84 -      
ENSG00000198947 E172 0.0000000       X 33128147 33128427 281 -      
ENSG00000198947 E173 0.0000000       X 33129029 33129077 49 -      
ENSG00000198947 E174 0.0000000       X 33159195 33159597 403 -      
ENSG00000198947 E175 0.0000000       X 33211282 33211554 273 -      
ENSG00000198947 E176 0.0000000       X 33339259 33339609 351 -      

Help

Please Click HERE to learn more details about the results from DEXseq.