ENSG00000203879

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000447750 ENSG00000203879 No_inf pgKDN_inf GDI1 protein_coding protein_coding 102.5615 81.45257 104.8872 1.848055 4.714753 0.3647673 67.952477 40.548150 78.7510427 1.6605768 2.4821444 0.9574904 0.64929167 0.497475 0.752375 0.254900 4.096601e-09 4.096601e-09 FALSE TRUE
ENST00000465640 ENSG00000203879 No_inf pgKDN_inf GDI1 protein_coding protein_coding_CDS_not_defined 102.5615 81.45257 104.8872 1.848055 4.714753 0.3647673 2.085029 4.595278 0.5283122 2.0796105 0.1788857 -3.0967732 0.02373333 0.057050 0.005075 -0.051975 4.087083e-01 4.096601e-09 FALSE TRUE
ENST00000489589 ENSG00000203879 No_inf pgKDN_inf GDI1 protein_coding retained_intron 102.5615 81.45257 104.8872 1.848055 4.714753 0.3647673 5.047078 0.000000 8.5921328 0.0000000 3.1929558 9.7485506 0.04396667 0.000000 0.078575 0.078575 1.009039e-02 4.096601e-09 FALSE FALSE
ENST00000630693 ENSG00000203879 No_inf pgKDN_inf GDI1 protein_coding protein_coding 102.5615 81.45257 104.8872 1.848055 4.714753 0.3647673 6.317539 3.683656 6.2648287 0.4942701 1.1174260 0.7645264 0.05920833 0.045275 0.058925 0.013650 8.400511e-01 4.096601e-09 FALSE TRUE
MSTRG.30573.8 ENSG00000203879 No_inf pgKDN_inf GDI1 protein_coding   102.5615 81.45257 104.8872 1.848055 4.714753 0.3647673 13.711590 22.418451 5.7653553 2.2543739 2.1389049 -1.9573484 0.14673333 0.276150 0.056800 -0.219350 6.891629e-02 4.096601e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000203879 E001 3.8875357 0.0343234984 4.261388e-01 7.049033e-01 X 154436913 154437153 241 + 0.739 0.633 -0.446
ENSG00000203879 E002 2.8087697 0.2082110852 9.114885e-01 9.717930e-01 X 154437154 154437163 10 + 0.583 0.579 -0.021
ENSG00000203879 E003 2.8087697 0.2082110852 9.114885e-01 9.717930e-01 X 154437164 154437165 2 + 0.583 0.579 -0.021
ENSG00000203879 E004 9.9296543 0.0014049368 5.655999e-01 8.043894e-01 X 154437166 154437188 23 + 1.009 1.066 0.208
ENSG00000203879 E005 44.6921541 0.0003253347 6.367084e-01 8.448856e-01 X 154437189 154437299 111 + 1.646 1.673 0.093
ENSG00000203879 E006 0.3798680 0.0331972380 9.528988e-02   X 154437660 154437942 283 + 0.000 0.246 11.724
ENSG00000203879 E007 0.8700036 0.0128114179 2.260224e-01 5.139387e-01 X 154438006 154438215 210 + 0.168 0.356 1.423
ENSG00000203879 E008 0.6065379 0.2217888890 7.282869e-01 8.916594e-01 X 154438216 154438386 171 + 0.233 0.178 -0.483
ENSG00000203879 E009 0.2543986 0.0160173866 2.243711e-01   X 154438387 154438475 89 + 0.000 0.178 11.335
ENSG00000203879 E010 0.2537694 0.0160090720 2.243624e-01   X 154438476 154438522 47 + 0.000 0.178 11.335
ENSG00000203879 E011 52.8344293 0.0004709623 1.625395e-01 4.310147e-01 X 154438523 154438630 108 + 1.756 1.705 -0.173
ENSG00000203879 E012 50.7409138 0.0002842200 8.580882e-01 9.504668e-01 X 154438765 154438864 100 + 1.714 1.713 -0.004
ENSG00000203879 E013 61.7501371 0.0003514596 8.176621e-01 9.336156e-01 X 154439006 154439140 135 + 1.799 1.797 -0.008
ENSG00000203879 E014 0.5080420 0.0159642480 3.965652e-02 1.930531e-01 X 154439141 154439251 111 + 0.000 0.304 12.307
ENSG00000203879 E015 1.3539708 0.0098236772 6.991103e-01 8.774050e-01 X 154439710 154439797 88 + 0.339 0.402 0.364
ENSG00000203879 E016 44.7923160 0.0003874094 2.740921e-01 5.676355e-01 X 154439941 154439992 52 + 1.682 1.639 -0.144
ENSG00000203879 E017 74.7826049 0.0003676809 2.992694e-03 3.447415e-02 X 154439993 154440139 147 + 1.925 1.829 -0.325
ENSG00000203879 E018 20.9432342 0.0072143224 2.364358e-05 7.108344e-04 X 154440140 154440267 128 + 1.153 1.472 1.114
ENSG00000203879 E019 22.9727873 0.0007488437 4.848292e-08 3.037024e-06 X 154440268 154440374 107 + 1.168 1.521 1.231
ENSG00000203879 E020 75.8317210 0.0003213998 1.360486e-02 9.817560e-02 X 154440375 154440506 132 + 1.923 1.845 -0.263
ENSG00000203879 E021 3.0874214 0.0389624474 3.056253e-01 5.989242e-01 X 154440507 154440523 17 + 0.527 0.681 0.685
ENSG00000203879 E022 5.3258091 0.0549463320 8.809054e-02 3.078916e-01 X 154440524 154440650 127 + 0.658 0.908 1.001
ENSG00000203879 E023 10.4575854 0.0477632624 1.452933e-03 1.994464e-02 X 154440651 154441095 445 + 0.809 1.216 1.507
ENSG00000203879 E024 78.5939324 0.0002028419 4.244892e-03 4.427538e-02 X 154441096 154441195 100 + 1.943 1.854 -0.300
ENSG00000203879 E025 7.3541721 0.1418967878 2.916584e-02 1.602354e-01 X 154441196 154441622 427 + 0.680 1.076 1.526
ENSG00000203879 E026 107.2295004 0.0001768786 2.057419e-02 1.291941e-01 X 154441623 154441765 143 + 2.063 2.004 -0.199
ENSG00000203879 E027 59.3746273 0.0002651683 3.924169e-01 6.774160e-01 X 154441766 154441794 29 + 1.794 1.767 -0.089
ENSG00000203879 E028 4.1142809 0.0046831924 1.732230e-03 2.284794e-02 X 154441795 154442048 254 + 0.461 0.865 1.745
ENSG00000203879 E029 1.9850575 0.0068954632 1.081438e-01 3.448611e-01 X 154442049 154442110 62 + 0.339 0.578 1.238
ENSG00000203879 E030 115.8121757 0.0001733278 8.118620e-01 9.307662e-01 X 154442111 154442255 145 + 2.068 2.068 0.000
ENSG00000203879 E031 1.4937322 0.0654318308 8.440667e-02 3.000492e-01 X 154442256 154442373 118 + 0.233 0.516 1.686
ENSG00000203879 E032 69.6120800 0.0002215629 2.423329e-01 5.320888e-01 X 154442374 154442428 55 + 1.824 1.872 0.162
ENSG00000203879 E033 1.6147602 0.0082709534 1.377575e-01 3.950394e-01 X 154442429 154442519 91 + 0.289 0.516 1.271
ENSG00000203879 E034 401.7010737 0.0021006514 5.252764e-01 7.780900e-01 X 154442520 154443467 948 + 2.596 2.614 0.062

Help

Please Click HERE to learn more details about the results from DEXseq.