ENSG00000204463

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000422948 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding protein_coding 182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 31.229379 35.591154 37.230268 9.442369 5.179453 0.06493945 0.16955833 0.178400 0.216825 0.038425 0.823968088 0.004012582 FALSE TRUE
ENST00000464126 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding protein_coding_CDS_not_defined 182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 12.490152 16.612423 0.000000 5.581872 0.000000 -10.69891499 0.06647500 0.084700 0.000000 -0.084700 0.004012582 0.004012582 FALSE TRUE
ENST00000469182 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding protein_coding_CDS_not_defined 182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 4.329021 10.845603 0.000000 5.682645 0.000000 -10.08422415 0.02229167 0.055325 0.000000 -0.055325 0.030191998 0.004012582 FALSE TRUE
MSTRG.24452.17 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding   182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 12.344180 6.831250 8.162883 4.076499 4.722658 0.25658519 0.06909167 0.035850 0.048375 0.012525 1.000000000 0.004012582 FALSE TRUE
MSTRG.24452.26 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding   182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 9.151797 7.824093 12.309335 4.517268 5.977984 0.65308622 0.05033333 0.038650 0.073675 0.035025 0.839317412 0.004012582 FALSE TRUE
MSTRG.24452.29 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding   182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 28.872829 35.169713 25.092269 2.146955 3.280550 -0.48692592 0.15793333 0.179150 0.150775 -0.028375 0.823444646 0.004012582 FALSE TRUE
MSTRG.24452.30 ENSG00000204463 No_inf pgKDN_inf BAG6 protein_coding   182.9611 197.211 169.5039 4.060622 7.762474 -0.218409 22.663637 21.683464 29.396014 7.613548 6.951253 0.43885076 0.12243333 0.107850 0.168950 0.061100 0.842938508 0.004012582 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000204463 E001 0.5074159 0.7472113210 3.313642e-01 6.236234e-01 6 31638917 31639027 111 - 0.000 0.297 12.847
ENSG00000204463 E002 0.1268540 0.0123926132 5.401243e-01   6 31639028 31639028 1 - 0.000 0.095 11.141
ENSG00000204463 E003 0.2537079 0.2879345734 3.086620e-01   6 31639029 31639040 12 - 0.000 0.174 12.140
ENSG00000204463 E004 0.6343313 0.0375783354 2.244801e-02 1.362186e-01 6 31639041 31639042 2 - 0.000 0.348 13.463
ENSG00000204463 E005 0.8795415 0.0231667634 5.234752e-02 2.273197e-01 6 31639043 31639044 2 - 0.095 0.393 2.597
ENSG00000204463 E006 1.5059429 0.1783591050 5.686781e-02 2.382035e-01 6 31639045 31639050 6 - 0.173 0.539 2.333
ENSG00000204463 E007 2.3770163 0.1419759749 4.790278e-02 2.153774e-01 6 31639051 31639051 1 - 0.296 0.671 1.918
ENSG00000204463 E008 6.2671898 0.0047657882 5.020805e-01 7.618932e-01 6 31639052 31639057 6 - 0.820 0.897 0.296
ENSG00000204463 E009 17.7438451 0.0021808228 6.742485e-01 8.650083e-01 6 31639058 31639084 27 - 1.285 1.260 -0.088
ENSG00000204463 E010 93.5758946 0.0005478799 4.471119e-01 7.212363e-01 6 31639085 31639226 142 - 1.960 1.989 0.099
ENSG00000204463 E011 5.5255792 0.0025321208 6.665979e-01 8.613391e-01 6 31639227 31639499 273 - 0.787 0.839 0.204
ENSG00000204463 E012 75.2628923 0.0015200306 2.340119e-02 1.397458e-01 6 31639500 31639646 147 - 1.833 1.923 0.305
ENSG00000204463 E013 3.6997893 0.0038223377 2.822228e-01 5.758050e-01 6 31639647 31640198 552 - 0.594 0.734 0.597
ENSG00000204463 E014 140.8742760 0.0012134613 2.367975e-03 2.892512e-02 6 31640199 31640306 108 - 2.101 2.194 0.310
ENSG00000204463 E015 6.1661848 0.0021972565 3.027798e-08 1.960399e-06 6 31640307 31640384 78 - 0.391 1.063 2.853
ENSG00000204463 E016 183.2017756 0.0039512117 9.177425e-04 1.406180e-02 6 31640385 31640528 144 - 2.201 2.318 0.392
ENSG00000204463 E017 1.8566304 0.0919219265 2.622769e-01 5.551230e-01 6 31640529 31640539 11 - 0.346 0.539 1.013
ENSG00000204463 E018 110.6742376 0.0025814975 4.592547e-03 4.666436e-02 6 31640645 31640704 60 - 1.990 2.096 0.353
ENSG00000204463 E019 2.5239720 0.0180097359 2.240406e-04 4.592704e-03 6 31640705 31640791 87 - 0.172 0.734 3.182
ENSG00000204463 E020 194.4165267 0.0025973519 2.751558e-01 5.686356e-01 6 31640792 31640938 147 - 2.271 2.309 0.127
ENSG00000204463 E021 1.1252508 0.0158913674 9.240899e-02 3.156420e-01 6 31640939 31641103 165 - 0.172 0.435 1.819
ENSG00000204463 E022 165.5396589 0.0001610008 4.368888e-02 2.041161e-01 6 31641104 31641228 125 - 2.243 2.200 -0.142
ENSG00000204463 E023 0.7450359 0.0140553019 4.165175e-01 6.963779e-01 6 31641229 31641319 91 - 0.172 0.297 1.012
ENSG00000204463 E024 136.2342151 0.0001217799 5.705360e-01 8.070060e-01 6 31641320 31641422 103 - 2.142 2.133 -0.032
ENSG00000204463 E025 4.7091663 0.0029488135 5.374169e-02 2.307030e-01 6 31641423 31641538 116 - 0.620 0.854 0.955
ENSG00000204463 E026 108.2956176 0.0003892809 7.799974e-01 9.152362e-01 6 31641539 31641592 54 - 2.032 2.045 0.044
ENSG00000204463 E027 0.8601212 0.0527984706 7.280111e-01 8.914846e-01 6 31641593 31641775 183 - 0.238 0.297 0.427
ENSG00000204463 E028 102.2241975 0.0009783796 2.569600e-01 5.492091e-01 6 31641776 31641847 72 - 2.030 1.998 -0.106
ENSG00000204463 E029 117.8087502 0.0001364375 4.492628e-01 7.230407e-01 6 31641848 31641945 98 - 2.061 2.087 0.087
ENSG00000204463 E030 108.1576978 0.0030775051 1.343362e-01 3.895997e-01 6 31642112 31642218 107 - 2.006 2.065 0.199
ENSG00000204463 E031 71.2408076 0.0011534429 5.830741e-01 8.143312e-01 6 31642219 31642300 82 - 1.845 1.871 0.086
ENSG00000204463 E032 46.1436247 0.0044506200 4.411399e-01 7.166849e-01 6 31642301 31642403 103 - 1.650 1.694 0.150
ENSG00000204463 E033 3.1113470 0.0047899535 2.783878e-02 1.558171e-01 6 31642684 31642828 145 - 0.432 0.734 1.374
ENSG00000204463 E034 22.0562928 0.0008881124 8.999812e-01 9.675022e-01 6 31642829 31642831 3 - 1.356 1.369 0.044
ENSG00000204463 E035 60.8337648 0.0002258983 3.912728e-01 6.764186e-01 6 31642832 31642958 127 - 1.771 1.809 0.128
ENSG00000204463 E036 87.6933830 0.0042782687 4.857826e-01 7.496078e-01 6 31642959 31643100 142 - 1.960 1.936 -0.081
ENSG00000204463 E037 42.5221982 0.0099877374 3.513882e-01 6.416485e-01 6 31643101 31643112 12 - 1.664 1.613 -0.171
ENSG00000204463 E038 37.3385622 0.0072355838 1.300605e-01 3.826260e-01 6 31643113 31643115 3 - 1.625 1.540 -0.291
ENSG00000204463 E039 68.2760465 0.0059365165 6.124099e-01 8.313964e-01 6 31643890 31643974 85 - 1.851 1.830 -0.071
ENSG00000204463 E040 27.8565810 0.0057077562 5.285995e-01 7.802047e-01 6 31643975 31643977 3 - 1.437 1.481 0.152
ENSG00000204463 E041 79.0542924 0.0002053772 5.974613e-02 2.451573e-01 6 31644082 31644194 113 - 1.932 1.873 -0.198
ENSG00000204463 E042 6.7821730 0.0561582474 4.088197e-01 6.910490e-01 6 31644195 31644227 33 - 0.820 0.948 0.488
ENSG00000204463 E043 6.0845406 0.0030581438 7.114904e-03 6.375356e-02 6 31644228 31644306 79 - 0.668 0.971 1.192
ENSG00000204463 E044 22.9445675 0.0007345186 1.435419e-01 4.034914e-01 6 31644307 31644316 10 - 1.421 1.335 -0.296
ENSG00000204463 E045 46.3464572 0.0104487804 8.690762e-02 3.055391e-01 6 31644317 31644414 98 - 1.724 1.624 -0.339
ENSG00000204463 E046 2.2439941 0.2345550406 2.421939e-01 5.318923e-01 6 31644494 31644524 31 - 0.346 0.623 1.390
ENSG00000204463 E047 61.8821891 0.0034371794 5.953041e-02 2.446631e-01 6 31644525 31644602 78 - 1.837 1.758 -0.268
ENSG00000204463 E048 0.3629695 0.0167121714 5.814567e-01   6 31644603 31644629 27 - 0.172 0.095 -0.988
ENSG00000204463 E049 137.3982307 0.0010971129 9.176254e-01 9.740666e-01 6 31644946 31645198 253 - 2.140 2.142 0.007
ENSG00000204463 E050 141.7332053 0.0004965410 8.472103e-01 9.457834e-01 6 31645407 31645604 198 - 2.149 2.159 0.034
ENSG00000204463 E051 74.0436238 0.0003687142 1.004104e-01 3.308990e-01 6 31646394 31646523 130 - 1.902 1.849 -0.179
ENSG00000204463 E052 26.5093258 0.0038003622 3.365057e-01 6.284367e-01 6 31647591 31647592 2 - 1.467 1.412 -0.188
ENSG00000204463 E053 26.6001168 0.0022832916 1.500338e-01 4.124821e-01 6 31647593 31647593 1 - 1.481 1.399 -0.280
ENSG00000204463 E054 28.6541618 0.0020211281 8.841345e-02 3.085004e-01 6 31647594 31647599 6 - 1.518 1.424 -0.321
ENSG00000204463 E055 29.2674685 0.0011665786 9.700217e-02 3.244530e-01 6 31647600 31647603 4 - 1.524 1.436 -0.302
ENSG00000204463 E056 56.0495746 0.0002613735 6.492192e-02 2.567290e-01 6 31647604 31647679 76 - 1.790 1.721 -0.234
ENSG00000204463 E057 34.3727305 0.0004283775 1.680609e-02 1.130696e-01 6 31647680 31647705 26 - 1.605 1.488 -0.400
ENSG00000204463 E058 62.7141224 0.0002261487 1.591153e-02 1.093910e-01 6 31647706 31647787 82 - 1.847 1.760 -0.292
ENSG00000204463 E059 50.3540266 0.0002761953 1.499204e-02 1.050378e-01 6 31647788 31647826 39 - 1.758 1.660 -0.332
ENSG00000204463 E060 60.6032781 0.0002593133 9.874861e-03 7.960997e-02 6 31648677 31648751 75 - 1.836 1.741 -0.321
ENSG00000204463 E061 28.4435973 0.0004815458 1.648405e-01 4.343189e-01 6 31648911 31648911 1 - 1.505 1.432 -0.249
ENSG00000204463 E062 45.5720929 0.0003064831 1.876021e-01 4.657583e-01 6 31648912 31648964 53 - 1.695 1.641 -0.182
ENSG00000204463 E063 110.2926418 0.0001521886 1.576039e-02 1.086706e-01 6 31649199 31649395 197 - 2.078 2.014 -0.216
ENSG00000204463 E064 87.5338847 0.0001920682 1.678147e-02 1.129812e-01 6 31649510 31649627 118 - 1.983 1.910 -0.242
ENSG00000204463 E065 58.6071820 0.0002443501 5.916388e-01 8.195148e-01 6 31651656 31651776 121 - 1.783 1.767 -0.055
ENSG00000204463 E066 5.1067936 0.0092852328 3.892728e-03 4.165682e-02 6 31651777 31651865 89 - 0.566 0.923 1.459
ENSG00000204463 E067 3.7166984 0.0148773052 8.232723e-02 2.954642e-01 6 31651866 31651901 36 - 0.536 0.772 1.012
ENSG00000204463 E068 6.6189627 0.0021227264 5.501330e-05 1.445245e-03 6 31651902 31652060 159 - 0.594 1.044 1.784
ENSG00000204463 E069 2.7531682 0.0053575366 2.246542e-03 2.789891e-02 6 31652061 31652079 19 - 0.296 0.734 2.182
ENSG00000204463 E070 4.3607799 0.0032438805 3.874337e-03 4.151768e-02 6 31652080 31652234 155 - 0.504 0.869 1.542
ENSG00000204463 E071 1.3520196 0.0104449787 7.702726e-01 9.114498e-01 6 31652235 31652246 12 - 0.346 0.394 0.275
ENSG00000204463 E072 5.3378272 0.0026526255 7.080708e-02 2.694306e-01 6 31652247 31652399 153 - 0.894 0.693 -0.796
ENSG00000204463 E073 2.9471432 0.0047696561 6.928503e-01 8.744165e-01 6 31652400 31652423 24 - 0.566 0.623 0.253
ENSG00000204463 E074 0.0000000       6 31652424 31652512 89 -      
ENSG00000204463 E075 8.2155262 0.0067922454 7.396403e-01 8.968699e-01 6 31652513 31652705 193 - 0.944 0.982 0.141

Help

Please Click HERE to learn more details about the results from DEXseq.