ENSG00000204713

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000377199 ENSG00000204713 No_inf pgKDN_inf TRIM27 protein_coding protein_coding 18.14539 19.28569 18.52671 1.580039 0.747809 -0.05789348 13.169936 9.992364 15.635766 1.0405405 0.3785641 0.6454313 0.74056667 0.534750 0.847925 0.313175 0.04798758 0.01547378 FALSE TRUE
ENST00000414543 ENSG00000204713 No_inf pgKDN_inf TRIM27 protein_coding protein_coding 18.14539 19.28569 18.52671 1.580039 0.747809 -0.05789348 1.679953 4.916291 0.000000 1.7318723 0.0000000 -8.9443579 0.08427500 0.245775 0.000000 -0.245775 0.01547378 0.01547378 FALSE TRUE
ENST00000481474 ENSG00000204713 No_inf pgKDN_inf TRIM27 protein_coding retained_intron 18.14539 19.28569 18.52671 1.580039 0.747809 -0.05789348 1.170379 1.336539 1.056823 0.1021634 0.1291403 -0.3359360 0.06452500 0.069550 0.056850 -0.012700 0.92758076 0.01547378 FALSE TRUE
ENST00000498117 ENSG00000204713 No_inf pgKDN_inf TRIM27 protein_coding protein_coding_CDS_not_defined 18.14539 19.28569 18.52671 1.580039 0.747809 -0.05789348 1.852019 2.430692 1.624633 1.1504486 0.7410488 -0.5783237 0.09594167 0.116850 0.084225 -0.032625 0.85658739 0.01547378 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000204713 E001 97.5578361 0.0001799049 0.0000386135 0.001067443 6 28903002 28904273 1272 - 1.938 2.039 0.340
ENSG00000204713 E002 37.4314557 0.0004814462 0.2387492173 0.527711991 6 28904274 28904473 200 - 1.559 1.607 0.165
ENSG00000204713 E003 17.3158904 0.0008243546 0.3346337914 0.626453971 6 28904474 28904553 80 - 1.230 1.290 0.210
ENSG00000204713 E004 17.6849780 0.0016016140 0.3046647124 0.598063207 6 28904554 28904665 112 - 1.237 1.301 0.226
ENSG00000204713 E005 17.2570412 0.0013608955 0.0251487257 0.145877756 6 28904666 28907235 2570 - 1.177 1.327 0.527
ENSG00000204713 E006 9.5278332 0.0303481371 0.7373146953 0.895860028 6 28907236 28907262 27 - 1.045 1.000 -0.163
ENSG00000204713 E007 1.7126554 0.0111755919 0.9946035332 1.000000000 6 28907263 28907491 229 - 0.435 0.432 -0.015
ENSG00000204713 E008 1.3232843 0.0099605977 0.1303321365 0.382980626 6 28907492 28907563 72 - 0.473 0.238 -1.430
ENSG00000204713 E009 9.7407847 0.0031328645 0.0913055943 0.313880803 6 28907564 28908807 1244 - 0.948 1.095 0.539
ENSG00000204713 E010 10.0833874 0.0018355195 0.0647850572 0.256561956 6 28908808 28908840 33 - 1.124 0.956 -0.614
ENSG00000204713 E011 17.8616030 0.0008554432 0.0100992791 0.080827203 6 28908973 28909088 116 - 1.360 1.180 -0.633
ENSG00000204713 E012 2.4561211 0.0062220699 0.6506682696 0.852929691 6 28911307 28911695 389 - 0.507 0.566 0.275
ENSG00000204713 E013 11.3037952 0.0115804689 0.0480449997 0.215663999 6 28911696 28911718 23 - 1.177 0.990 -0.678
ENSG00000204713 E014 0.8630139 0.0128542352 0.7036780884 0.879477178 6 28914776 28915290 515 - 0.240 0.295 0.400
ENSG00000204713 E015 32.8843967 0.0007192458 0.0132010859 0.096292584 6 28920012 28920242 231 - 1.593 1.462 -0.446
ENSG00000204713 E016 14.3847254 0.0053032306 0.2288087219 0.517511777 6 28921892 28921987 96 - 1.237 1.135 -0.359
ENSG00000204713 E017 34.4237478 0.0116739640 0.0076608351 0.067118174 6 28923213 28923988 776 - 1.632 1.455 -0.605

Help

Please Click HERE to learn more details about the results from DEXseq.