ENSG00000205531

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000380542 ENSG00000205531 No_inf pgKDN_inf NAP1L4 protein_coding protein_coding 77.67021 73.46672 79.7734 2.743694 2.324175 0.1188013 16.77202 10.612061 20.3587315 3.597917 1.7756834 0.9392925 0.21395000 0.13955 0.255875 0.116325 0.658084272 0.001039921 FALSE  
ENST00000492594 ENSG00000205531 No_inf pgKDN_inf NAP1L4 protein_coding retained_intron 77.67021 73.46672 79.7734 2.743694 2.324175 0.1188013 21.22282 19.353426 21.0839114 2.763188 1.7072051 0.1234924 0.26504167 0.26020 0.263250 0.003050 1.000000000 0.001039921    
ENST00000620138 ENSG00000205531 No_inf pgKDN_inf NAP1L4 protein_coding protein_coding 77.67021 73.46672 79.7734 2.743694 2.324175 0.1188013 21.46587 21.142955 23.9109222 2.270593 2.3956779 0.1774138 0.28036667 0.29230 0.300550 0.008250 0.990881228 0.001039921 FALSE  
MSTRG.4275.9 ENSG00000205531 No_inf pgKDN_inf NAP1L4 protein_coding   77.67021 73.46672 79.7734 2.743694 2.324175 0.1188013 2.08130 4.964643 0.3519169 0.794071 0.2045592 -3.7808626 0.02820833 0.06715 0.004400 -0.062750 0.001039921 0.001039921    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000205531 E001 0.0000000       11 2944431 2944436 6 -      
ENSG00000205531 E002 0.4909846 0.0157975046 9.613041e-01   11 2944437 2944437 1 - 0.170 0.177 0.070
ENSG00000205531 E003 1.2168585 0.0105942245 5.812496e-01 0.8133954693 11 2944438 2944443 6 - 0.386 0.302 -0.515
ENSG00000205531 E004 1.2168585 0.0105942245 5.812496e-01 0.8133954693 11 2944444 2944445 2 - 0.386 0.302 -0.515
ENSG00000205531 E005 133.8382797 0.0001370199 1.254168e-03 0.0178193625 11 2944446 2945062 617 - 2.087 2.168 0.272
ENSG00000205531 E006 18.8429884 0.0007438738 3.167986e-02 0.1681278974 11 2945063 2945111 49 - 1.218 1.363 0.507
ENSG00000205531 E007 60.9531687 0.0011786740 2.455950e-01 0.5360985638 11 2945112 2945330 219 - 1.768 1.814 0.157
ENSG00000205531 E008 52.6508468 0.0023672787 9.737171e-02 0.3250987908 11 2945331 2945434 104 - 1.690 1.765 0.252
ENSG00000205531 E009 77.6730757 0.0002065103 4.336448e-01 0.7110617873 11 2945435 2945596 162 - 1.882 1.909 0.089
ENSG00000205531 E010 43.5886069 0.0003951307 7.254369e-01 0.8898233518 11 2945597 2945643 47 - 1.641 1.657 0.054
ENSG00000205531 E011 31.3743484 0.0004441863 5.243848e-01 0.7775378548 11 2945644 2945646 3 - 1.493 1.526 0.115
ENSG00000205531 E012 13.8311597 0.0009574738 8.706296e-01 0.9554108956 11 2949227 2949264 38 - 1.165 1.177 0.045
ENSG00000205531 E013 0.9882947 0.0114095897 4.410196e-01 0.7166453408 11 2950969 2951016 48 - 0.235 0.353 0.807
ENSG00000205531 E014 54.2721568 0.0002889231 4.080789e-02 0.1960567109 11 2951259 2951315 57 - 1.699 1.781 0.280
ENSG00000205531 E015 36.5392705 0.0015189728 1.352699e-02 0.0978362352 11 2951780 2951809 30 - 1.506 1.632 0.432
ENSG00000205531 E016 1.9781640 0.0106090419 2.792102e-01 0.5724738306 11 2951810 2951897 88 - 0.386 0.545 0.807
ENSG00000205531 E017 9.8487321 0.0016755753 3.452357e-06 0.0001362103 11 2951898 2952769 872 - 0.762 1.199 1.631
ENSG00000205531 E018 3.9997304 0.0034662684 7.455964e-04 0.0119539221 11 2952838 2953044 207 - 0.427 0.862 1.907
ENSG00000205531 E019 1.2365887 0.0114702221 4.838511e-01 0.7482668421 11 2954301 2954303 3 - 0.291 0.399 0.655
ENSG00000205531 E020 1.8527556 0.0083016051 3.912010e-01 0.6763721721 11 2954304 2954410 107 - 0.386 0.513 0.655
ENSG00000205531 E021 0.8695306 0.0124489273 2.287442e-01 0.5174873626 11 2954411 2954487 77 - 0.170 0.353 1.392
ENSG00000205531 E022 1.1051117 0.0133857580 6.885291e-01 0.8717611607 11 2954488 2954526 39 - 0.291 0.353 0.392
ENSG00000205531 E023 38.9842190 0.0005231813 8.951563e-03 0.0746780497 11 2954527 2954561 35 - 1.534 1.659 0.427
ENSG00000205531 E024 43.1550550 0.0005122133 3.798518e-01 0.6664799401 11 2954562 2954646 85 - 1.624 1.664 0.136
ENSG00000205531 E025 26.8639330 0.0076930763 4.069807e-01 0.6895607345 11 2955744 2955766 23 - 1.472 1.416 -0.193
ENSG00000205531 E026 0.3641952 0.0165486431 6.141711e-01   11 2955767 2955790 24 - 0.170 0.097 -0.930
ENSG00000205531 E027 51.1227923 0.0004098368 2.573635e-01 0.5495653863 11 2958399 2958483 85 - 1.692 1.740 0.160
ENSG00000205531 E028 42.5514844 0.0003509097 8.488878e-01 0.9464293487 11 2958484 2958544 61 - 1.643 1.635 -0.029
ENSG00000205531 E029 0.3795211 0.5966395781 2.961538e-01   11 2958545 2958934 390 - 0.000 0.243 10.486
ENSG00000205531 E030 61.7343636 0.0004092018 2.968108e-03 0.0342864654 11 2959770 2959909 140 - 1.851 1.738 -0.383
ENSG00000205531 E031 0.2536433 0.0160531839 2.260998e-01   11 2959910 2960131 222 - 0.000 0.177 11.163
ENSG00000205531 E032 31.0554300 0.0028222886 4.149522e-02 0.1979482623 11 2964680 2964718 39 - 1.561 1.445 -0.398
ENSG00000205531 E033 19.3658600 0.0040257445 1.155065e-01 0.3582860362 11 2964719 2964724 6 - 1.361 1.251 -0.387
ENSG00000205531 E034 25.5146858 0.0020437338 3.546702e-01 0.6444138845 11 2964725 2964751 27 - 1.451 1.395 -0.193
ENSG00000205531 E035 42.1746494 0.0004032166 4.278290e-02 0.2016152998 11 2969803 2969864 62 - 1.680 1.587 -0.316
ENSG00000205531 E036 45.0570646 0.0003188821 1.029309e-02 0.0818077559 11 2969865 2969915 51 - 1.717 1.603 -0.386
ENSG00000205531 E037 31.9747217 0.0004169980 2.754064e-01 0.5689878587 11 2969916 2969934 19 - 1.546 1.489 -0.195
ENSG00000205531 E038 26.2285439 0.0005096731 2.257449e-01 0.5136065887 11 2971448 2971449 2 - 1.469 1.399 -0.240
ENSG00000205531 E039 27.5515992 0.0004859452 1.342479e-01 0.3894221712 11 2971450 2971463 14 - 1.496 1.412 -0.289
ENSG00000205531 E040 36.4501930 0.0003942298 8.457062e-02 0.3004566119 11 2971464 2971528 65 - 1.614 1.530 -0.289
ENSG00000205531 E041 16.6731472 0.0010283218 9.494952e-02 0.3206039930 11 2971529 2971534 6 - 1.303 1.185 -0.419
ENSG00000205531 E042 24.5009937 0.0005472632 1.564291e-01 0.4226761567 11 2972102 2972148 47 - 1.447 1.363 -0.290
ENSG00000205531 E043 18.2589314 0.0007607323 6.882757e-02 0.2649829692 11 2972149 2972180 32 - 1.343 1.219 -0.435
ENSG00000205531 E044 15.4943852 0.0008723056 3.818512e-01 0.6681792398 11 2972181 2972194 14 - 1.248 1.185 -0.226
ENSG00000205531 E045 22.6952619 0.0006567202 2.581187e-01 0.5504025733 11 2972195 2972243 49 - 1.408 1.339 -0.241
ENSG00000205531 E046 1.1272353 0.1637529879 1.334384e-01 0.3880969229 11 2972244 2972279 36 - 0.170 0.440 1.877
ENSG00000205531 E047 30.7742139 0.0004859794 3.824964e-01 0.6687486543 11 2976024 2976123 100 - 1.525 1.478 -0.159
ENSG00000205531 E048 23.6482907 0.0039537686 2.513618e-01 0.5425780746 11 2978284 2978342 59 - 1.428 1.354 -0.258
ENSG00000205531 E049 15.4427667 0.0009013456 7.841853e-02 0.2867795724 11 2979207 2979237 31 - 1.277 1.147 -0.458
ENSG00000205531 E050 0.0000000       11 2981702 2981799 98 -      
ENSG00000205531 E051 0.0000000       11 2983746 2983813 68 -      
ENSG00000205531 E052 0.8688090 0.3333406251 3.535599e-01 0.6432405918 11 2988077 2988126 50 - 0.169 0.353 1.394
ENSG00000205531 E053 2.0586858 0.0119543594 2.732554e-01 0.5670242055 11 2989129 2989197 69 - 0.560 0.399 -0.804
ENSG00000205531 E054 0.9455859 0.0118475612 2.605759e-03 0.0310446208 11 2989198 2989271 74 - 0.464 0.000 -13.850
ENSG00000205531 E055 0.0000000       11 2990909 2990992 84 -      
ENSG00000205531 E056 7.0838134 0.0020688612 7.357084e-01 0.8951585829 11 2991794 2992228 435 - 0.925 0.891 -0.129
ENSG00000205531 E057 0.2457744 0.0163164343 9.700255e-01   11 2992229 2992253 25 - 0.093 0.097 0.070
ENSG00000205531 E058 6.6914306 0.0080854306 3.254055e-01 0.6179071911 11 2992254 2992377 124 - 0.937 0.830 -0.406

Help

Please Click HERE to learn more details about the results from DEXseq.