ENSG00000205903

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000382252 ENSG00000205903 No_inf pgKDN_inf ZNF316 protein_coding protein_coding 8.995941 8.87004 7.495022 0.3173184 0.5839174 -0.2427098 5.2424689 3.936213 5.7624694 0.5788776 0.5126248 0.5487199 0.59937500 0.440375 0.772050 0.331675 0.10045767 0.01691864 FALSE TRUE
ENST00000427912 ENSG00000205903 No_inf pgKDN_inf ZNF316 protein_coding protein_coding 8.995941 8.87004 7.495022 0.3173184 0.5839174 -0.2427098 0.6123902 0.000000 0.6028488 0.0000000 0.6028488 5.9374593 0.05184167 0.000000 0.065275 0.065275 0.82900515 0.01691864   FALSE
MSTRG.25814.3 ENSG00000205903 No_inf pgKDN_inf ZNF316 protein_coding   8.995941 8.87004 7.495022 0.3173184 0.5839174 -0.2427098 3.0115845 4.933827 0.9710713 0.4117622 0.3315322 -2.3331983 0.33317500 0.559625 0.139150 -0.420475 0.01691864 0.01691864 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000205903 E001 0.3624961 0.016620874 0.3558625312   7 6637318 6637332 15 + 0.207 0.078 -1.629
ENSG00000205903 E002 1.0886533 0.011343899 0.1054038557 0.339678033 7 6637333 6637349 17 + 0.452 0.201 -1.635
ENSG00000205903 E003 3.6449060 0.003988322 0.0257604910 0.148278156 7 6637350 6637447 98 + 0.812 0.526 -1.220
ENSG00000205903 E004 6.0010525 0.002393033 0.1875460353 0.465661903 7 6637846 6638009 164 + 0.920 0.772 -0.576
ENSG00000205903 E005 7.8476462 0.001966657 0.0357749867 0.181428127 7 6639042 6639141 100 + 0.791 1.002 0.802
ENSG00000205903 E006 7.3583599 0.007535918 0.0266733203 0.151431459 7 6641825 6641871 47 + 0.746 0.984 0.918
ENSG00000205903 E007 4.9639792 0.002999362 0.3532164030 0.643000502 7 6641872 6641884 13 + 0.696 0.800 0.420
ENSG00000205903 E008 6.0814865 0.005441206 0.3223642895 0.615382281 7 6641885 6641962 78 + 0.769 0.874 0.410
ENSG00000205903 E009 1.3715016 0.165307015 0.5236091999 0.776772433 7 6641963 6641990 28 + 0.282 0.410 0.781
ENSG00000205903 E010 8.4014223 0.001818330 0.0001270123 0.002884329 7 6641991 6642381 391 + 0.668 1.072 1.562
ENSG00000205903 E011 6.1026727 0.002322118 0.0552334741 0.234158136 7 6642382 6642641 260 + 0.696 0.907 0.835
ENSG00000205903 E012 0.9806780 0.012899836 0.5585791652 0.800148965 7 6642642 6642673 32 + 0.346 0.252 -0.635
ENSG00000205903 E013 3.7199278 0.040925820 0.5250687534 0.777922921 7 6642674 6642764 91 + 0.607 0.693 0.365
ENSG00000205903 E014 6.1966036 0.003361496 0.4181767312 0.697810830 7 6642964 6643073 110 + 0.791 0.874 0.322
ENSG00000205903 E015 14.9924866 0.024291799 0.3296871100 0.622138644 7 6643822 6643948 127 + 1.250 1.151 -0.350
ENSG00000205903 E016 15.3485230 0.016914847 0.0017035625 0.022552759 7 6644480 6644593 114 + 1.355 1.072 -1.003
ENSG00000205903 E017 250.5240671 0.003615486 0.6082151518 0.829375910 7 6652303 6658279 5977 + 2.396 2.381 -0.048

Help

Please Click HERE to learn more details about the results from DEXseq.