ENSG00000206560

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000479043 ENSG00000206560 No_inf pgKDN_inf ANKRD28 protein_coding retained_intron 31.16653 31.18477 30.70527 2.326917 1.417847 -0.02234802 2.757213 3.366277 2.259385 0.6618281 0.7776286 -0.5731319 0.08550000 0.106000 0.071275 -0.034725 0.82084421 0.02218667   FALSE
ENST00000498713 ENSG00000206560 No_inf pgKDN_inf ANKRD28 protein_coding protein_coding_CDS_not_defined 31.16653 31.18477 30.70527 2.326917 1.417847 -0.02234802 6.456652 7.751042 5.021818 1.0865040 1.1260679 -0.6251706 0.20432500 0.244425 0.162025 -0.082400 0.60800511 0.02218667 FALSE TRUE
ENST00000683139 ENSG00000206560 No_inf pgKDN_inf ANKRD28 protein_coding protein_coding 31.16653 31.18477 30.70527 2.326917 1.417847 -0.02234802 1.630308 1.507710 3.008241 0.9914973 1.3217671 0.9918114 0.05754167 0.056500 0.099950 0.043450 0.83366668 0.02218667 FALSE TRUE
MSTRG.19792.6 ENSG00000206560 No_inf pgKDN_inf ANKRD28 protein_coding   31.16653 31.18477 30.70527 2.326917 1.417847 -0.02234802 3.891439 6.756814 2.350487 0.6999422 0.8164685 -1.5193924 0.12677500 0.220675 0.079025 -0.141650 0.38452970 0.02218667 FALSE TRUE
MSTRG.19792.7 ENSG00000206560 No_inf pgKDN_inf ANKRD28 protein_coding   31.16653 31.18477 30.70527 2.326917 1.417847 -0.02234802 2.464582 2.924647 1.833217 0.9966606 1.0592922 -0.6709610 0.07892500 0.088175 0.060350 -0.027825 0.83425581 0.02218667 FALSE TRUE
MSTRG.19792.9 ENSG00000206560 No_inf pgKDN_inf ANKRD28 protein_coding   31.16653 31.18477 30.70527 2.326917 1.417847 -0.02234802 11.659292 7.550074 14.239074 0.9164841 0.4585535 0.9143958 0.37752500 0.243100 0.465250 0.222150 0.02218667 0.02218667 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000206560 E001 0.2542726 0.2296584681 0.298900342   3 15667236 15667238 3 - 0.000 0.172 10.914
ENSG00000206560 E002 0.4991656 0.0274559991 0.328248453   3 15667239 15667241 3 - 0.096 0.238 1.560
ENSG00000206560 E003 0.7528089 0.0254426963 0.099003659 0.328458970 3 15667242 15667270 29 - 0.096 0.345 2.297
ENSG00000206560 E004 33.8310523 0.0006212264 0.000396486 0.007241475 3 15667271 15668305 1035 - 1.438 1.618 0.617
ENSG00000206560 E005 0.0000000       3 15668306 15668566 261 -      
ENSG00000206560 E006 202.3609345 0.0001279382 0.023935286 0.141657602 3 15668567 15669791 1225 - 2.286 2.327 0.135
ENSG00000206560 E007 59.4178527 0.0002968131 0.287225878 0.580609441 3 15669792 15670109 318 - 1.803 1.760 -0.144
ENSG00000206560 E008 75.5889176 0.0002562540 0.154665037 0.420131156 3 15670110 15670556 447 - 1.859 1.905 0.153
ENSG00000206560 E009 19.3024264 0.0007483517 0.201312799 0.483640874 3 15675898 15675989 92 - 1.262 1.345 0.289
ENSG00000206560 E010 6.8285420 0.0020402352 0.005163691 0.050783826 3 15675990 15676223 234 - 0.716 1.010 1.136
ENSG00000206560 E011 5.2915019 0.0248500780 0.511093708 0.768369646 3 15676596 15676973 378 - 0.755 0.834 0.312
ENSG00000206560 E012 17.1132344 0.0009190683 0.456101818 0.728525601 3 15676974 15677056 83 - 1.285 1.231 -0.190
ENSG00000206560 E013 15.4506740 0.0008781722 0.773701515 0.912963387 3 15677480 15677535 56 - 1.206 1.225 0.067
ENSG00000206560 E014 11.6298120 0.0013057927 0.874563188 0.957112996 3 15677536 15677562 27 - 1.109 1.094 -0.055
ENSG00000206560 E015 0.7341482 0.0595371265 0.986687638 0.999455555 3 15677563 15677606 44 - 0.241 0.238 -0.025
ENSG00000206560 E016 30.3472290 0.0033890002 0.752249123 0.902416916 3 15678209 15678354 146 - 1.507 1.486 -0.071
ENSG00000206560 E017 18.8012884 0.0098887155 0.313451933 0.606583914 3 15679301 15679384 84 - 1.256 1.330 0.259
ENSG00000206560 E018 14.9654140 0.0043930457 0.644247891 0.849328195 3 15679476 15679563 88 - 1.185 1.218 0.117
ENSG00000206560 E019 1.9617720 0.0082205529 0.978944965 0.997306770 3 15683742 15685225 1484 - 0.474 0.469 -0.025
ENSG00000206560 E020 32.6325240 0.0186286755 0.071209408 0.270389203 3 15685226 15685445 220 - 1.591 1.457 -0.459
ENSG00000206560 E021 15.6929438 0.0008751376 0.036576519 0.183970717 3 15686002 15686119 118 - 1.296 1.142 -0.545
ENSG00000206560 E022 0.1272623 0.0125881866 0.543605877   3 15686120 15686221 102 - 0.000 0.094 12.704
ENSG00000206560 E023 12.1698108 0.0087165661 0.133325120 0.387830054 3 15686222 15686309 88 - 1.185 1.049 -0.490
ENSG00000206560 E024 0.4909196 0.1030193752 0.994213655   3 15686310 15686453 144 - 0.174 0.172 -0.025
ENSG00000206560 E025 0.0000000       3 15689840 15690018 179 -      
ENSG00000206560 E026 19.7793443 0.0007343408 0.307991858 0.601277491 3 15690019 15690220 202 - 1.352 1.283 -0.239
ENSG00000206560 E027 10.1549117 0.0014534472 0.869640167 0.955134144 3 15694739 15694813 75 - 1.056 1.039 -0.060
ENSG00000206560 E028 4.9051298 0.0027991735 0.782862942 0.916554799 3 15695188 15695214 27 - 0.755 0.785 0.120
ENSG00000206560 E029 11.7838429 0.0155933657 0.512263734 0.769199506 3 15696134 15696245 112 - 1.074 1.134 0.217
ENSG00000206560 E030 16.1723316 0.0009477115 0.917483874 0.974066581 3 15707924 15708064 141 - 1.232 1.237 0.019
ENSG00000206560 E031 5.3759745 0.0095009191 0.745594306 0.899375633 3 15709668 15709736 69 - 0.825 0.785 -0.156
ENSG00000206560 E032 0.0000000       3 15711211 15711274 64 -      
ENSG00000206560 E033 0.0000000       3 15712140 15712222 83 -      
ENSG00000206560 E034 7.0412980 0.0032960457 0.109429323 0.347255890 3 15713527 15713641 115 - 0.984 0.818 -0.631
ENSG00000206560 E035 9.7478568 0.0016198463 0.243913865 0.533941488 3 15714578 15714656 79 - 1.083 0.977 -0.387
ENSG00000206560 E036 0.3638483 0.0165536434 0.576631998   3 15714876 15714909 34 - 0.174 0.094 -1.025
ENSG00000206560 E037 16.4124319 0.0008458032 0.016738262 0.112802878 3 15720915 15721100 186 - 1.322 1.149 -0.610
ENSG00000206560 E038 6.5551215 0.0054137046 0.057085652 0.238819232 3 15721101 15721127 27 - 0.973 0.767 -0.790
ENSG00000206560 E039 5.3388985 0.0029940744 0.066040652 0.258797669 3 15724382 15724396 15 - 0.898 0.689 -0.832
ENSG00000206560 E040 12.8361733 0.0391320436 0.719780793 0.887059802 3 15724397 15724524 128 - 1.164 1.118 -0.162
ENSG00000206560 E041 8.9773266 0.0294135374 0.454322282 0.727039669 3 15735410 15735497 88 - 0.949 1.039 0.333
ENSG00000206560 E042 4.0625338 0.0034600788 0.408437973 0.690749542 3 15737033 15737038 6 - 0.649 0.749 0.416
ENSG00000206560 E043 12.6318372 0.0010768126 0.668127631 0.861890876 3 15737039 15737233 195 - 1.117 1.149 0.115
ENSG00000206560 E044 6.9992572 0.0020840699 0.540935398 0.788742862 3 15751750 15751820 71 - 0.870 0.931 0.229
ENSG00000206560 E045 0.0000000       3 15756480 15756483 4 -      
ENSG00000206560 E046 0.0000000       3 15756484 15756548 65 -      
ENSG00000206560 E047 9.6387380 0.0103066627 0.320993226 0.614025488 3 15766234 15766312 79 - 1.074 0.977 -0.355
ENSG00000206560 E048 0.1176306 0.0117723908 0.532808979   3 15781437 15781655 219 - 0.096 0.000 -13.582
ENSG00000206560 E049 9.7323309 0.0540692257 0.224180457 0.511742869 3 15795223 15795306 84 - 1.101 0.954 -0.536
ENSG00000206560 E050 1.3271517 0.0764986399 0.165221747 0.434798685 3 15795780 15795953 174 - 0.474 0.238 -1.440
ENSG00000206560 E051 0.3795211 0.5750288044 0.308958042   3 15796396 15796404 9 - 0.000 0.237 13.215
ENSG00000206560 E052 45.9261093 0.0008386052 0.121409692 0.368779015 3 15796405 15797970 1566 - 1.706 1.636 -0.240
ENSG00000206560 E053 0.1176306 0.0117723908 0.532808979   3 15797971 15798184 214 - 0.096 0.000 -13.582
ENSG00000206560 E054 0.3621152 0.1978991586 0.622029743   3 15814240 15814309 70 - 0.174 0.094 -1.024
ENSG00000206560 E055 0.7451009 0.0132592607 0.422496310 0.701815081 3 15859377 15859771 395 - 0.174 0.295 0.975

Help

Please Click HERE to learn more details about the results from DEXseq.