ENSG00000214413

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000398289 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding nonsense_mediated_decay 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 0.5065774 0.0000000 0.59852660 0.0000000 0.59852660 5.92724842 0.04908333 0.000000 0.059775 0.059775 0.84787797 0.02452946   FALSE
ENST00000422050 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding retained_intron 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 0.3695349 0.6533789 0.08570889 0.2441551 0.08570889 -2.79310821 0.04643333 0.085400 0.008550 -0.076850 0.30268127 0.02452946 FALSE FALSE
ENST00000423273 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding protein_coding 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 1.5084063 0.6669863 2.00907282 0.6669863 1.15993886 1.57649447 0.18089167 0.090175 0.203725 0.113550 0.81297115 0.02452946   FALSE
ENST00000431847 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding retained_intron 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 0.8696154 2.6088463 0.00000000 0.9836957 0.00000000 -8.03278755 0.11105833 0.333175 0.000000 -0.333175 0.02452946 0.02452946   FALSE
ENST00000447005 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding protein_coding 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 0.6478147 0.0000000 1.94344403 0.0000000 1.30404650 7.60987611 0.06330833 0.000000 0.189925 0.189925 0.48935677 0.02452946   FALSE
ENST00000454061 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding protein_coding 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 0.5941339 0.5590499 0.85056863 0.5590499 0.62912369 0.59673497 0.06657500 0.077475 0.086850 0.009375 0.84241900 0.02452946 FALSE FALSE
ENST00000652043 ENSG00000214413 No_inf pgKDN_inf BBIP1 protein_coding protein_coding 8.036798 7.639203 9.07418 0.5253863 0.95541 0.2480469 2.3156637 2.2789624 2.34260024 0.7763550 1.35334145 0.03956244 0.33570000 0.301300 0.301325 0.000025 0.86779362 0.02452946   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000214413 E001 0.0000000       10 110898730 110898771 42 -      
ENSG00000214413 E002 0.0000000       10 110898772 110898832 61 -      
ENSG00000214413 E003 0.0000000       10 110898833 110898973 141 -      
ENSG00000214413 E004 0.0000000       10 110898974 110899890 917 -      
ENSG00000214413 E005 0.0000000       10 110899891 110899892 2 -      
ENSG00000214413 E006 0.0000000       10 110899893 110899955 63 -      
ENSG00000214413 E007 1.4716041 0.011936212 0.721029879 0.8876518 10 110899956 110900120 165 - 0.365 0.422 0.319
ENSG00000214413 E008 1.8035063 0.011928274 0.147329575 0.4086435 10 110900121 110900164 44 - 0.533 0.321 -1.141
ENSG00000214413 E009 2.0309335 0.007398069 0.016809280 0.1130696 10 110900165 110900217 53 - 0.609 0.260 -1.904
ENSG00000214413 E010 1.4318485 0.011069537 0.038766390 0.1904734 10 110900218 110900228 11 - 0.504 0.189 -2.003
ENSG00000214413 E011 1.1965872 0.011107991 0.099688774 0.3298739 10 110900229 110900233 5 - 0.440 0.189 -1.681
ENSG00000214413 E012 1.0795832 0.012222168 0.158598315 0.4257337 10 110900234 110900237 4 - 0.404 0.189 -1.489
ENSG00000214413 E013 10.5673072 0.001823561 0.140049532 0.3980728 10 110900238 110900526 289 - 1.108 1.001 -0.392
ENSG00000214413 E014 1.3504787 0.036734601 0.528312020 0.7800604 10 110900527 110901025 499 - 0.321 0.422 0.582
ENSG00000214413 E015 0.3709916 0.017261398 0.457908557   10 110901026 110901122 97 - 0.086 0.189 1.319
ENSG00000214413 E016 0.2541163 0.016215621 0.177293276   10 110901123 110901279 157 - 0.000 0.189 10.936
ENSG00000214413 E017 0.7418937 0.016143179 0.282565044 0.5762146 10 110901280 110901537 258 - 0.158 0.321 1.319
ENSG00000214413 E018 3.5566905 0.004421521 0.434022894 0.7112695 10 110901538 110901585 48 - 0.609 0.708 0.418
ENSG00000214413 E019 2.7045956 0.027596007 0.353374914 0.6431308 10 110901586 110901612 27 - 0.504 0.631 0.582
ENSG00000214413 E020 4.7183673 0.003410446 0.002082014 0.0263471 10 110901613 110904945 3333 - 0.560 0.909 1.434
ENSG00000214413 E021 0.4988833 0.015574639 0.226105168   10 110906479 110907679 1201 - 0.086 0.260 1.904
ENSG00000214413 E022 0.0000000       10 110907680 110907836 157 -      
ENSG00000214413 E023 0.0000000       10 110908524 110908551 28 -      
ENSG00000214413 E024 0.0000000       10 110910750 110911039 290 -      
ENSG00000214413 E025 0.1272623 0.012601854 0.432369534   10 110917959 110918120 162 - 0.000 0.105 10.074
ENSG00000214413 E026 4.6523924 0.003180919 0.492753775 0.7548551 10 110918121 110918213 93 - 0.713 0.792 0.319
ENSG00000214413 E027 0.0000000       10 110918536 110918657 122 -      
ENSG00000214413 E028 0.1187032 0.012565145 0.666234005   10 110918845 110919120 276 - 0.086 0.000 -10.271
ENSG00000214413 E029 1.9474498 0.009504784 0.936312248 0.9818608 10 110919121 110919201 81 - 0.473 0.464 -0.044

Help

Please Click HERE to learn more details about the results from DEXseq.