ENSG00000215039

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000417058 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA retained_intron 13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 1.4358590 2.790949 0.9919951 1.1871207 0.3583271 -1.483040 0.10722500 0.094850 0.162825 0.067975 0.84140940 0.01785448   FALSE
ENST00000447687 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA retained_intron 13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 4.3512539 11.202604 0.3118792 1.6047074 0.3118792 -5.122458 0.21683333 0.408625 0.055525 -0.353100 0.01785448 0.01785448   FALSE
ENST00000536388 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA retained_intron 13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 0.5275091 0.000000 1.5825273 0.0000000 0.9148911 7.315174 0.07581667 0.000000 0.227450 0.227450 0.17112138 0.01785448   FALSE
ENST00000659623 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA lncRNA 13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 0.3443881 0.000000 0.0000000 0.0000000 0.0000000 0.000000 0.09860833 0.000000 0.000000 0.000000   0.01785448 TRUE FALSE
ENST00000659820 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA lncRNA 13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 0.4529036 0.792913 0.0000000 0.4715616 0.0000000 -6.327172 0.06111667 0.032250 0.000000 -0.032250 0.83444762 0.01785448   FALSE
MSTRG.5868.2 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA   13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 2.4146752 4.200565 1.9757986 1.6510062 0.4052282 -1.084294 0.21844167 0.166150 0.348550 0.182400 0.72188147 0.01785448 TRUE FALSE
MSTRG.5868.7 ENSG00000215039 No_inf pgKDN_inf CD27-AS1 lncRNA   13.04375 27.19096 6.049467 2.627906 0.5584176 -2.166395 0.3947938 0.000000 0.6254384 0.0000000 0.3629124 5.989680 0.05982500 0.000000 0.101775 0.101775 0.15898566 0.01785448   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000215039 E001 0.0000000       12 6439001 6439149 149 -      
ENSG00000215039 E002 0.2543986 0.0162076464 1.000000000   12 6439150 6439157 8 - 0.000 0.091 9.935
ENSG00000215039 E003 0.2543986 0.0162076464 1.000000000   12 6439158 6439160 3 - 0.000 0.091 11.893
ENSG00000215039 E004 0.2543986 0.0162076464 1.000000000   12 6439161 6439164 4 - 0.000 0.091 11.893
ENSG00000215039 E005 0.3816610 0.0224350575 1.000000000   12 6439165 6439167 3 - 0.000 0.131 12.376
ENSG00000215039 E006 1.3703380 0.0099445995 0.457310091 0.72925110 12 6439168 6439209 42 - 0.404 0.287 -0.714
ENSG00000215039 E007 1.3703380 0.0099445995 0.457310091 0.72925110 12 6439210 6439211 2 - 0.404 0.287 -0.714
ENSG00000215039 E008 1.4879686 0.0090528132 0.208631551 0.49268409 12 6439212 6439224 13 - 0.484 0.287 -1.129
ENSG00000215039 E009 1.3607063 0.0094642437 0.153887897 0.41892741 12 6439225 6439238 14 - 0.484 0.260 -1.322
ENSG00000215039 E010 1.1065900 0.0115180981 0.070370923 0.26843379 12 6439239 6439243 5 - 0.484 0.200 -1.807
ENSG00000215039 E011 2.3767288 0.0061761830 0.743121521 0.89839494 12 6439244 6439282 39 - 0.484 0.440 -0.222
ENSG00000215039 E012 22.0465873 0.0007707165 0.644942964 0.84965168 12 6439283 6439676 394 - 1.265 1.246 -0.067
ENSG00000215039 E013 0.6353689 0.0153758895 0.466687364 0.73532913 12 6443540 6443542 3 - 0.000 0.200 12.969
ENSG00000215039 E014 0.6353689 0.0153758895 0.466687364 0.73532913 12 6443543 6443545 3 - 0.000 0.200 12.969
ENSG00000215039 E015 2.7689956 0.0567401985 0.610549822 0.83067947 12 6443546 6443607 62 - 0.404 0.508 0.534
ENSG00000215039 E016 5.6683339 0.0027363212 0.189200347 0.46775504 12 6443608 6443717 110 - 0.551 0.754 0.871
ENSG00000215039 E017 10.2974218 0.0020029140 0.578104843 0.81148077 12 6446961 6447087 127 - 0.884 0.958 0.279
ENSG00000215039 E018 11.5298899 0.0016896755 0.918792545 0.97439961 12 6447088 6447615 528 - 0.987 0.990 0.012
ENSG00000215039 E019 1.6413852 0.0089283926 0.293121747 0.58673990 12 6447616 6447772 157 - 0.180 0.381 1.456
ENSG00000215039 E020 0.7440586 0.1464761034 0.393994531 0.67881744 12 6447773 6447829 57 - 0.306 0.167 -1.128
ENSG00000215039 E021 8.1660891 0.0023282941 0.552696019 0.79613085 12 6447830 6448036 207 - 0.787 0.871 0.330
ENSG00000215039 E022 12.2845366 0.0013164296 0.839459131 0.94241265 12 6448037 6448150 114 - 0.987 1.020 0.123
ENSG00000215039 E023 8.4018981 0.0022288603 0.709976658 0.88268784 12 6448640 6448737 98 - 0.822 0.878 0.219
ENSG00000215039 E024 1.7480583 0.1845690765 0.835099999 0.94067132 12 6448738 6448757 20 - 0.404 0.359 -0.254
ENSG00000215039 E025 1.0056053 0.0125232570 0.709457612 0.88244936 12 6448758 6448785 28 - 0.180 0.260 0.678
ENSG00000215039 E026 2.0804725 0.0072470442 0.001230729 0.01756035 12 6450341 6450410 70 - 0.749 0.287 -2.299
ENSG00000215039 E027 3.8460988 0.0077036140 0.058759321 0.24301244 12 6450411 6450473 63 - 0.787 0.539 -1.059
ENSG00000215039 E028 4.5243953 0.0035788554 0.490476734 0.75309948 12 6450474 6450708 235 - 0.551 0.665 0.503
ENSG00000215039 E029 4.9259148 0.0038022011 0.059611627 0.24484757 12 6450709 6450869 161 - 0.404 0.717 1.456
ENSG00000215039 E030 0.8886039 0.0127881197 0.255507156 0.54745885 12 6450870 6450892 23 - 0.000 0.260 13.342
ENSG00000215039 E031 0.3804973 0.0161202150 1.000000000   12 6450893 6450980 88 - 0.000 0.131 12.381
ENSG00000215039 E032 0.5074127 0.0163672919 0.666574192 0.86133908 12 6450981 6451362 382 - 0.000 0.167 12.715
ENSG00000215039 E033 0.0000000       12 6451363 6451468 106 -      
ENSG00000215039 E034 0.0000000       12 6451469 6451607 139 -      

Help

Please Click HERE to learn more details about the results from DEXseq.