ENSG00000215256

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000555045 ENSG00000215256 No_inf pgKDN_inf DHRS4-AS1 lncRNA lncRNA 4.670964 6.348535 4.601895 0.2442025 0.2237408 -0.463335 1.0833660 0.0000000 1.6766495 0.0000000 0.97138898 7.398016 0.29980000 0.000000 0.396300 0.396300 5.128060e-01 8.189094e-08   FALSE
ENST00000556379 ENSG00000215256 No_inf pgKDN_inf DHRS4-AS1 lncRNA lncRNA 4.670964 6.348535 4.601895 0.2442025 0.2237408 -0.463335 0.8287718 0.6184345 1.8678808 0.3652128 1.09698594 1.579271 0.15652500 0.093800 0.375775 0.281975 8.438689e-01 8.189094e-08   FALSE
ENST00000663118 ENSG00000215256 No_inf pgKDN_inf DHRS4-AS1 lncRNA lncRNA 4.670964 6.348535 4.601895 0.2442025 0.2237408 -0.463335 0.4871670 0.5767192 0.2574783 0.1641831 0.07008764 -1.133249 0.11823333 0.093225 0.056375 -0.036850 8.357862e-01 8.189094e-08 FALSE FALSE
ENST00000666884 ENSG00000215256 No_inf pgKDN_inf DHRS4-AS1 lncRNA lncRNA 4.670964 6.348535 4.601895 0.2442025 0.2237408 -0.463335 0.4207764 0.8556392 0.4066900 0.6341729 0.24795297 -1.054791 0.07066667 0.129325 0.082675 -0.046650 1.000000e+00 8.189094e-08   FALSE
ENST00000667602 ENSG00000215256 No_inf pgKDN_inf DHRS4-AS1 lncRNA lncRNA 4.670964 6.348535 4.601895 0.2442025 0.2237408 -0.463335 0.1681050 0.0000000 0.2568993 0.0000000 0.25689931 4.738224 0.05018333 0.000000 0.058150 0.058150 8.192417e-01 8.189094e-08   FALSE
ENST00000671464 ENSG00000215256 No_inf pgKDN_inf DHRS4-AS1 lncRNA lncRNA 4.670964 6.348535 4.601895 0.2442025 0.2237408 -0.463335 1.5917574 4.1609789 0.0000000 0.3225141 0.00000000 -8.704242 0.28695833 0.661450 0.000000 -0.661450 8.189094e-08 8.189094e-08   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000215256 E001 0.0000000       14 23938219 23938730 512 -      
ENSG00000215256 E002 0.1265070 0.0123791550 0.771086512   14 23938731 23938736 6 - 0.000 0.081 10.355
ENSG00000215256 E003 0.1265070 0.0123791550 0.771086512   14 23938737 23938740 4 - 0.000 0.081 11.965
ENSG00000215256 E004 0.1265070 0.0123791550 0.771086512   14 23938741 23938746 6 - 0.000 0.081 11.965
ENSG00000215256 E005 0.1265070 0.0123791550 0.771086512   14 23938747 23938747 1 - 0.000 0.081 11.965
ENSG00000215256 E006 0.1265070 0.0123791550 0.771086512   14 23938748 23938756 9 - 0.000 0.081 11.965
ENSG00000215256 E007 0.1265070 0.0123791550 0.771086512   14 23938757 23938761 5 - 0.000 0.081 11.965
ENSG00000215256 E008 0.1265070 0.0123791550 0.771086512   14 23938762 23938776 15 - 0.000 0.081 11.965
ENSG00000215256 E009 0.1265070 0.0123791550 0.771086512   14 23938777 23938812 36 - 0.000 0.081 11.965
ENSG00000215256 E010 31.2431554 0.0007738765 0.000955218 0.01447562 14 23938813 23939894 1082 - 1.406 1.551 0.498
ENSG00000215256 E011 15.2503706 0.0010719025 0.541232831 0.78892061 14 23939895 23940215 321 - 1.223 1.187 -0.128
ENSG00000215256 E012 9.7783139 0.0017419600 0.029317952 0.16079260 14 23940216 23940650 435 - 1.122 0.945 -0.646
ENSG00000215256 E013 1.4543299 0.0133359646 0.078468178 0.28692222 14 23940651 23940685 35 - 0.522 0.261 -1.502
ENSG00000215256 E014 9.9645883 0.0016633808 0.522425442 0.77595298 14 23940686 23941158 473 - 1.060 1.011 -0.180
ENSG00000215256 E015 0.2459655 0.0165617340 0.780985929   14 23952598 23952985 388 - 0.111 0.081 -0.502
ENSG00000215256 E016 0.0000000       14 23952986 23953131 146 -      
ENSG00000215256 E017 0.0000000       14 23953132 23953308 177 -      
ENSG00000215256 E018 0.0000000       14 23953309 23953340 32 -      
ENSG00000215256 E019 0.0000000       14 23953341 23953419 79 -      
ENSG00000215256 E020 0.1186381 0.0119722884 0.371854513   14 23953420 23953573 154 - 0.111 0.000 -13.577
ENSG00000215256 E021 0.3622142 0.0168011432 0.383878561   14 23953574 23953773 200 - 0.199 0.081 -1.502
ENSG00000215256 E022 1.4610880 0.0106881760 0.232595089 0.52130459 14 23953774 23954033 260 - 0.483 0.307 -0.987
ENSG00000215256 E023 0.9817817 0.0126906308 0.617626342 0.83450437 14 23954034 23954124 91 - 0.335 0.261 -0.502
ENSG00000215256 E024 0.1186381 0.0119722884 0.371854513   14 23954125 23954218 94 - 0.111 0.000 -13.577
ENSG00000215256 E025 0.0000000       14 23954748 23955092 345 -      
ENSG00000215256 E026 0.1176306 0.0119479243 0.371753436   14 23988729 23990213 1485 - 0.111 0.000 -13.577
ENSG00000215256 E027 0.1271363 0.0125099997 0.770827671   14 24044427 24046236 1810 - 0.000 0.081 11.965
ENSG00000215256 E028 0.0000000       14 24052298 24052386 89 -      
ENSG00000215256 E029 0.0000000       14 24052387 24052555 169 -      

Help

Please Click HERE to learn more details about the results from DEXseq.