ENSG00000215301

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000611968 ENSG00000215301 No_inf pgKDN_inf DDX3X protein_coding protein_coding 76.82299 68.31966 89.53615 1.702188 4.04516 0.3901193 3.032442 7.907098 1.190228 1.359842 1.1902275 -2.7216638 0.04281667 0.116700 0.011750 -0.104950 0.013673592 0.007097142 FALSE FALSE
ENST00000644876 ENSG00000215301 No_inf pgKDN_inf DDX3X protein_coding protein_coding 76.82299 68.31966 89.53615 1.702188 4.04516 0.3901193 44.250233 31.485722 57.603534 4.545141 3.6733742 0.8712519 0.57483333 0.466125 0.647000 0.180875 0.330321093 0.007097142 FALSE TRUE
ENST00000646196 ENSG00000215301 No_inf pgKDN_inf DDX3X protein_coding retained_intron 76.82299 68.31966 89.53615 1.702188 4.04516 0.3901193 2.364506 4.451012 0.992550 0.627171 0.1005316 -2.1536970 0.03289167 0.065375 0.011025 -0.054350 0.007097142 0.007097142 FALSE TRUE
ENST00000646319 ENSG00000215301 No_inf pgKDN_inf DDX3X protein_coding protein_coding 76.82299 68.31966 89.53615 1.702188 4.04516 0.3901193 13.349216 7.132225 19.479086 2.842200 2.5573366 1.4482210 0.17093333 0.106550 0.219400 0.112850 0.577632413 0.007097142 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000215301 E001 0.0000000       X 41333348 41333348 1 +      
ENSG00000215301 E002 0.0000000       X 41333349 41333397 49 +      
ENSG00000215301 E003 0.2352613 2.606143e-01 3.798686e-01   X 41333398 41333699 302 + 0.159 0.000 -12.310
ENSG00000215301 E004 0.8524393 1.831756e-01 9.442253e-01 9.845722e-01 X 41333700 41333783 84 + 0.276 0.258 -0.130
ENSG00000215301 E005 0.7437487 1.380979e-02 2.930255e-01 5.866601e-01 X 41333784 41333912 129 + 0.159 0.318 1.284
ENSG00000215301 E006 0.1272623 1.236022e-02 4.418068e-01   X 41333913 41334011 99 + 0.000 0.104 13.471
ENSG00000215301 E007 0.8620409 5.858289e-02 5.506811e-01 7.948458e-01 X 41334012 41334125 114 + 0.222 0.318 0.699
ENSG00000215301 E008 0.8541719 2.526319e-01 8.315903e-01 9.392391e-01 X 41334126 41334161 36 + 0.276 0.258 -0.132
ENSG00000215301 E009 0.4828334 3.287214e-02 4.261440e-01   X 41334162 41334163 2 + 0.222 0.104 -1.301
ENSG00000215301 E010 3.6671845 4.073555e-03 8.671413e-01 9.542307e-01 X 41334164 41334174 11 + 0.658 0.680 0.092
ENSG00000215301 E011 21.7720338 6.723994e-04 1.905821e-01 4.697750e-01 X 41334175 41334244 70 + 1.393 1.311 -0.287
ENSG00000215301 E012 20.9105931 7.035009e-04 1.431626e-01 4.029474e-01 X 41334245 41334256 12 + 1.381 1.287 -0.329
ENSG00000215301 E013 26.0524340 5.158562e-04 6.065779e-03 5.694547e-02 X 41334257 41334297 41 + 1.500 1.338 -0.557
ENSG00000215301 E014 0.0000000       X 41334591 41334605 15 +      
ENSG00000215301 E015 0.0000000       X 41334606 41334609 4 +      
ENSG00000215301 E016 0.0000000       X 41334610 41334612 3 +      
ENSG00000215301 E017 0.0000000       X 41334613 41334613 1 +      
ENSG00000215301 E018 0.0000000       X 41334614 41334620 7 +      
ENSG00000215301 E019 0.0000000       X 41334621 41334633 13 +      
ENSG00000215301 E020 0.3809057 1.584167e-02 7.063599e-02   X 41334634 41334769 136 + 0.000 0.258 14.993
ENSG00000215301 E021 0.1272623 1.236022e-02 4.418068e-01   X 41334770 41334815 46 + 0.000 0.104 13.471
ENSG00000215301 E022 0.5083889 1.574877e-02 2.811740e-02 1.567587e-01 X 41334816 41335122 307 + 0.000 0.318 15.395
ENSG00000215301 E023 0.0000000       X 41335123 41335208 86 +      
ENSG00000215301 E024 0.8719553 3.689600e-02 1.720956e-01 4.448089e-01 X 41335209 41336082 874 + 0.159 0.371 1.606
ENSG00000215301 E025 0.1265070 1.230306e-02 4.418437e-01   X 41336083 41336159 77 + 0.000 0.104 13.472
ENSG00000215301 E026 1.3811339 5.670677e-01 1.685954e-01 4.398929e-01 X 41336160 41336738 579 + 0.160 0.536 2.453
ENSG00000215301 E027 20.9626964 8.679937e-03 1.386574e-04 3.103050e-03 X 41337408 41337465 58 + 1.455 1.162 -1.026
ENSG00000215301 E028 0.9779077 1.206215e-02 7.844916e-01 9.168385e-01 X 41337466 41337690 225 + 0.276 0.318 0.284
ENSG00000215301 E029 11.1144962 1.327128e-02 7.317580e-03 6.505796e-02 X 41337691 41338912 1222 + 0.943 1.200 0.937
ENSG00000215301 E030 1.2521053 9.855420e-03 2.522970e-02 1.462059e-01 X 41338913 41339035 123 + 0.159 0.500 2.284
ENSG00000215301 E031 11.1417176 2.548629e-02 3.073588e-04 5.916162e-03 X 41339036 41339038 3 + 1.229 0.824 -1.492
ENSG00000215301 E032 21.3917594 7.049034e-04 9.295862e-04 1.419086e-02 X 41339039 41339083 45 + 1.438 1.222 -0.752
ENSG00000215301 E033 2.8833853 5.117549e-03 2.481109e-04 4.995004e-03 X 41339084 41339604 521 + 0.276 0.788 2.532
ENSG00000215301 E034 0.2441377 1.638033e-02 8.791287e-01   X 41339910 41339942 33 + 0.087 0.104 0.284
ENSG00000215301 E035 0.0000000       X 41339943 41339947 5 +      
ENSG00000215301 E036 0.2357071 1.568435e-02 3.168524e-01   X 41339948 41340005 58 + 0.159 0.000 -14.878
ENSG00000215301 E037 0.2357071 1.568435e-02 3.168524e-01   X 41340006 41340008 3 + 0.159 0.000 -14.878
ENSG00000215301 E038 0.3629695 1.663052e-02 7.119087e-01   X 41340009 41340011 3 + 0.159 0.104 -0.716
ENSG00000215301 E039 0.3629695 1.663052e-02 7.119087e-01   X 41340012 41340021 10 + 0.159 0.104 -0.716
ENSG00000215301 E040 2.4911533 6.745308e-03 7.474717e-03 6.602381e-02 X 41340022 41340635 614 + 0.324 0.703 1.869
ENSG00000215301 E041 1.1056435 1.150479e-02 5.352926e-01 7.850784e-01 X 41340636 41340814 179 + 0.276 0.371 0.606
ENSG00000215301 E042 1.1179854 6.900054e-02 2.193280e-01 5.059770e-01 X 41340815 41341069 255 + 0.222 0.418 1.284
ENSG00000215301 E043 0.4821733 2.929662e-02 4.258263e-01   X 41341070 41341319 250 + 0.222 0.104 -1.301
ENSG00000215301 E044 0.9895507 1.581881e-02 3.311645e-01 6.234650e-01 X 41341320 41341483 164 + 0.222 0.371 1.021
ENSG00000215301 E045 21.0219327 6.298335e-04 1.259785e-01 3.763042e-01 X 41341484 41341504 21 + 1.385 1.287 -0.342
ENSG00000215301 E046 49.5889083 6.385409e-03 6.895264e-02 2.652940e-01 X 41341505 41341616 112 + 1.747 1.648 -0.333
ENSG00000215301 E047 5.6303848 4.367179e-03 2.623345e-06 1.072688e-04 X 41341617 41341948 332 + 0.477 1.030 2.284
ENSG00000215301 E048 3.5191949 4.694611e-03 1.024594e-05 3.484267e-04 X 41341949 41342046 98 + 0.276 0.874 2.869
ENSG00000215301 E049 6.3932999 2.247221e-03 5.914075e-08 3.641207e-06 X 41342047 41342319 273 + 0.477 1.091 2.507
ENSG00000215301 E050 3.9905133 3.545988e-03 6.918156e-04 1.124261e-02 X 41342320 41342494 175 + 0.443 0.874 1.869
ENSG00000215301 E051 72.2510438 1.085021e-03 3.263838e-01 6.188499e-01 X 41342495 41342639 145 + 1.881 1.844 -0.122
ENSG00000215301 E052 25.9300364 5.952110e-04 3.312411e-01 6.235328e-01 X 41342640 41342653 14 + 1.455 1.399 -0.194
ENSG00000215301 E053 1.0876721 1.311467e-02 4.774566e-01 7.438228e-01 X 41342654 41342736 83 + 0.367 0.258 -0.716
ENSG00000215301 E054 57.0890401 4.887836e-04 1.812094e-01 4.570402e-01 X 41342737 41342836 100 + 1.788 1.734 -0.181
ENSG00000215301 E055 0.6243553 1.489537e-02 1.154406e-01 3.581982e-01 X 41342837 41343023 187 + 0.087 0.318 2.284
ENSG00000215301 E056 0.3707119 2.184759e-01 5.228095e-01   X 41343024 41343215 192 + 0.087 0.188 1.285
ENSG00000215301 E057 26.6440647 5.698065e-03 3.598862e-01 6.493829e-01 X 41343216 41343220 5 + 1.468 1.408 -0.208
ENSG00000215301 E058 43.0710523 1.566858e-02 4.650730e-01 7.343486e-01 X 41343221 41343288 68 + 1.669 1.613 -0.192
ENSG00000215301 E059 33.1418661 3.728656e-03 6.906455e-01 8.730025e-01 X 41343289 41343351 63 + 1.543 1.520 -0.078
ENSG00000215301 E060 1.7677662 7.700445e-03 1.543639e-04 3.373363e-03 X 41343352 41343736 385 + 0.087 0.654 3.985
ENSG00000215301 E061 39.4665169 1.934846e-03 3.916321e-02 1.916201e-01 X 41343737 41343822 86 + 1.652 1.548 -0.356
ENSG00000215301 E062 1.7509291 6.817484e-02 2.177236e-02 1.339221e-01 X 41343823 41343988 166 + 0.221 0.599 2.159
ENSG00000215301 E063 0.7421760 4.383930e-02 3.019513e-01 5.951993e-01 X 41343989 41344029 41 + 0.159 0.318 1.285
ENSG00000215301 E064 54.5030373 4.878049e-04 5.478634e-03 5.288789e-02 X 41344030 41344128 99 + 1.794 1.679 -0.389
ENSG00000215301 E065 0.1271363 1.233945e-02 4.419028e-01   X 41344191 41344238 48 + 0.000 0.104 13.472
ENSG00000215301 E066 82.0790766 2.071672e-04 1.386940e-01 3.960658e-01 X 41344239 41344399 161 + 1.941 1.892 -0.164
ENSG00000215301 E067 0.2442663 1.644691e-02 8.790420e-01   X 41344400 41344564 165 + 0.087 0.104 0.284
ENSG00000215301 E068 91.2738476 2.070575e-04 3.065208e-02 1.647302e-01 X 41345180 41345324 145 + 1.995 1.927 -0.229
ENSG00000215301 E069 0.8412684 1.300468e-02 3.740648e-01 6.617642e-01 X 41345325 41345403 79 + 0.324 0.188 -1.037
ENSG00000215301 E070 59.8403232 1.178382e-03 6.728590e-01 8.644716e-01 X 41345404 41345485 82 + 1.775 1.793 0.060
ENSG00000215301 E071 28.8487968 5.129287e-04 3.989401e-01 6.827294e-01 X 41345486 41345494 9 + 1.451 1.499 0.162
ENSG00000215301 E072 42.7509030 3.806397e-04 4.510866e-01 7.242254e-01 X 41345495 41345548 54 + 1.624 1.659 0.119
ENSG00000215301 E073 51.3277901 2.288402e-03 1.421727e-01 4.011690e-01 X 41346229 41346319 91 + 1.748 1.681 -0.227
ENSG00000215301 E074 50.3401658 2.840513e-04 6.367652e-02 2.540372e-01 X 41346320 41346410 91 + 1.745 1.666 -0.266
ENSG00000215301 E075 0.1187032 1.184229e-02 6.528692e-01   X 41346411 41346493 83 + 0.087 0.000 -13.935
ENSG00000215301 E076 0.0000000       X 41346494 41346504 11 +      
ENSG00000215301 E077 63.1075043 2.281801e-04 2.072914e-02 1.297270e-01 X 41346505 41346622 118 + 1.845 1.757 -0.296
ENSG00000215301 E078 84.4158165 3.028029e-04 1.352592e-01 3.909049e-01 X 41346859 41347012 154 + 1.953 1.904 -0.165
ENSG00000215301 E079 0.4985363 1.526710e-02 2.341121e-01   X 41347013 41347311 299 + 0.087 0.258 1.869
ENSG00000215301 E080 14.5428594 9.329880e-04 6.747878e-01 8.652809e-01 X 41347312 41347314 3 + 1.175 1.208 0.114
ENSG00000215301 E081 77.6298268 2.452469e-03 9.994403e-01 1.000000e+00 X 41347315 41347451 137 + 1.894 1.895 0.002
ENSG00000215301 E082 0.6256450 1.955136e-01 1.699972e-01 4.420747e-01 X 41347452 41347454 3 + 0.087 0.318 2.285
ENSG00000215301 E083 2.7215345 5.631996e-03 8.555847e-02 3.027724e-01 X 41347455 41347639 185 + 0.443 0.680 1.092
ENSG00000215301 E084 134.7181330 1.290273e-04 9.089375e-01 9.711299e-01 X 41347640 41347859 220 + 2.130 2.134 0.012
ENSG00000215301 E085 62.1460126 4.729028e-04 3.763713e-01 6.635247e-01 X 41347860 41347915 56 + 1.815 1.781 -0.114
ENSG00000215301 E086 1360.1120079 5.172387e-05 5.335238e-10 4.795846e-08 X 41347916 41351668 3753 + 3.114 3.153 0.129
ENSG00000215301 E087 0.2530140 2.789939e-01 2.395646e-01   X 41357833 41357939 107 + 0.000 0.188 13.728
ENSG00000215301 E088 0.0000000       X 41357940 41357990 51 +      
ENSG00000215301 E089 0.0000000       X 41357991 41358000 10 +      
ENSG00000215301 E090 0.2543986 1.602836e-02 1.824838e-01   X 41364274 41364472 199 + 0.000 0.188 14.421

Help

Please Click HERE to learn more details about the results from DEXseq.