ENSG00000226067

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000613486 ENSG00000226067 No_inf pgKDN_inf   lncRNA lncRNA 53.51024 44.78974 55.1328 1.642474 2.122753 0.2996821 4.389831 0.7818672 2.9680710 0.7818672 2.9680710 1.9110477 0.07620833 0.016575 0.052100 0.035525 1.000000e+00 9.1164e-16   FALSE
ENST00000621058 ENSG00000226067 No_inf pgKDN_inf   lncRNA lncRNA 53.51024 44.78974 55.1328 1.642474 2.122753 0.2996821 11.554263 0.0000000 22.0670095 0.0000000 5.4333417 11.1083290 0.19818333 0.000000 0.396775 0.396775 9.116400e-16 9.1164e-16   FALSE
ENST00000659101 ENSG00000226067 No_inf pgKDN_inf   lncRNA lncRNA 53.51024 44.78974 55.1328 1.642474 2.122753 0.2996821 21.263352 23.4133196 19.3982623 3.1474101 3.2407291 -0.2712746 0.41029167 0.518425 0.360225 -0.158200 4.780192e-01 9.1164e-16   FALSE
MSTRG.1651.6 ENSG00000226067 No_inf pgKDN_inf   lncRNA   53.51024 44.78974 55.1328 1.642474 2.122753 0.2996821 8.465753 14.1660430 2.6821899 2.3261784 1.3182681 -2.3966028 0.16741667 0.314575 0.047600 -0.266975 1.228890e-02 9.1164e-16   FALSE
MSTRG.1651.8 ENSG00000226067 No_inf pgKDN_inf   lncRNA   53.51024 44.78974 55.1328 1.642474 2.122753 0.2996821 5.107305 1.9910820 6.8646182 0.8624250 1.8065933 1.7804993 0.09147500 0.045375 0.121850 0.076475 5.097047e-01 9.1164e-16   FALSE
MSTRG.1651.9 ENSG00000226067 No_inf pgKDN_inf   lncRNA   53.51024 44.78974 55.1328 1.642474 2.122753 0.2996821 1.660830 3.0428670 0.7186773 2.3346511 0.7186773 -2.0668129 0.03555833 0.073550 0.013425 -0.060125 8.066367e-01 9.1164e-16   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000226067 E001 0.0000000       1 120913184 120913211 28 +      
ENSG00000226067 E002 0.0000000       1 120913212 120913220 9 +      
ENSG00000226067 E003 0.0000000       1 120913221 120913274 54 +      
ENSG00000226067 E004 0.0000000       1 120913275 120913305 31 +      
ENSG00000226067 E005 0.0000000       1 120913306 120913327 22 +      
ENSG00000226067 E006 0.0000000       1 120913328 120913450 123 +      
ENSG00000226067 E007 1.5406705 0.0121818583 0.0003533956 0.006652456 1 120914246 120914412 167 + 0.624 0.088 -3.841
ENSG00000226067 E008 0.0000000       1 120948927 120948976 50 +      
ENSG00000226067 E009 0.3719033 0.0190456536 0.6949018223   1 120948977 120949038 62 + 0.103 0.161 0.744
ENSG00000226067 E010 29.4722363 0.0006427931 0.7107531239 0.883083208 1 120952439 120952625 187 + 1.491 1.472 -0.063
ENSG00000226067 E011 2.5852413 0.0084076144 0.7912652544 0.920040967 1 120952626 120952785 160 + 0.532 0.567 0.159
ENSG00000226067 E012 28.6869870 0.0010426394 0.1843298246 0.461564825 1 120952786 120953219 434 + 1.439 1.492 0.181
ENSG00000226067 E013 0.1186381 0.0121008012 0.4522312723   1 120953220 120953222 3 + 0.103 0.000 -10.991
ENSG00000226067 E014 2.4516854 0.0065379904 0.7068009395 0.881022310 1 120953223 120953463 241 + 0.565 0.511 -0.256
ENSG00000226067 E015 0.0000000       1 121001000 121001622 623 +      
ENSG00000226067 E016 0.2543986 0.0162864589 0.3056971113   1 121006847 121007090 244 + 0.000 0.161 10.338
ENSG00000226067 E017 0.0000000       1 121008411 121008499 89 +      
ENSG00000226067 E018 0.0000000       1 121008940 121009291 352 +      

Help

Please Click HERE to learn more details about the results from DEXseq.