ENSG00000231365

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000425884 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 1.9072052 0.5753104 2.1969811 0.5753104 0.2801861 1.9148005 0.21631667 0.063125 0.292950 0.229825 0.09425965 0.0143159   FALSE
ENST00000440150 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 0.6864514 0.3867058 1.3032585 0.3867058 0.5073539 1.7270094 0.08031667 0.037600 0.168300 0.130700 0.41328560 0.0143159   FALSE
ENST00000445565 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 0.6156321 1.2504930 0.3595401 0.2181423 0.2086635 -1.7701851 0.06946667 0.128850 0.054650 -0.074200 0.56945030 0.0143159   FALSE
ENST00000457043 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 0.7768328 1.2483656 0.0000000 0.2398513 0.0000000 -6.9754074 0.07566667 0.131550 0.000000 -0.131550 0.01431590 0.0143159   FALSE
ENST00000667936 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 0.5550687 0.1863809 0.5136279 0.1863809 0.3074843 1.4148874 0.05777500 0.020550 0.061650 0.041100 0.79760921 0.0143159   FALSE
ENST00000670000 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 1.7657213 1.3860131 1.6897314 0.1657961 0.3558806 0.2839943 0.20052500 0.146125 0.235500 0.089375 0.80899850 0.0143159   FALSE
ENST00000688395 ENSG00000231365 No_inf pgKDN_inf WARS2-AS1 lncRNA lncRNA 9.100825 9.576874 7.430538 0.294775 0.5143592 -0.3656535 2.4047860 4.2938601 0.9735636 0.5027030 0.2714501 -2.1295409 0.25601667 0.445775 0.131575 -0.314200 0.04837188 0.0143159 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000231365 E001 0.0000000       1 119140391 119140395 5 +      
ENSG00000231365 E002 0.0000000       1 119140396 119140409 14 +      
ENSG00000231365 E003 0.0000000       1 119140410 119140424 15 +      
ENSG00000231365 E004 0.0000000       1 119140425 119140441 17 +      
ENSG00000231365 E005 0.5073513 0.016411759 6.346026e-02 2.535159e-01 1 119140442 119140535 94 + 0.000 0.284 11.258
ENSG00000231365 E006 0.8878486 0.014110335 7.646382e-03 6.702421e-02 1 119140536 119140707 172 + 0.000 0.417 13.883
ENSG00000231365 E007 0.9957579 0.012556298 2.178687e-01 5.042908e-01 1 119140708 119140729 22 + 0.182 0.377 1.415
ENSG00000231365 E008 0.9957579 0.012556298 2.178687e-01 5.042908e-01 1 119140730 119140740 11 + 0.182 0.377 1.415
ENSG00000231365 E009 2.2132457 0.007719412 8.778489e-01 9.585069e-01 1 119140741 119140793 53 + 0.488 0.519 0.152
ENSG00000231365 E010 0.7515530 0.014513670 1.318112e-01 3.851712e-01 1 119141747 119141813 67 + 0.100 0.333 2.152
ENSG00000231365 E011 0.9965418 0.013291792 2.179082e-01 5.042908e-01 1 119141814 119142200 387 + 0.182 0.377 1.415
ENSG00000231365 E012 1.9968592 0.008106929 8.112510e-02 2.926103e-01 1 119146409 119146836 428 + 0.309 0.576 1.414
ENSG00000231365 E013 5.3047660 0.004105025 3.707925e-01 6.589885e-01 1 119146953 119147069 117 + 0.734 0.845 0.443
ENSG00000231365 E014 4.4553943 0.040515223 2.758598e-01 5.693405e-01 1 119150565 119150652 88 + 0.641 0.800 0.652
ENSG00000231365 E015 3.9637519 0.003845451 1.692840e-01 4.409854e-01 1 119150653 119150746 94 + 0.586 0.767 0.762
ENSG00000231365 E016 2.8661372 0.004850960 4.613772e-02 2.106940e-01 1 119150747 119150792 46 + 0.408 0.692 1.332
ENSG00000231365 E017 10.0630253 0.005096857 4.399766e-03 4.534626e-02 1 119150793 119151419 627 + 0.875 1.144 0.993
ENSG00000231365 E018 0.1268540 0.012514622 6.273436e-01   1 119160589 119160591 3 + 0.000 0.090 11.530
ENSG00000231365 E019 7.2980999 0.003202768 9.215099e-02 3.152998e-01 1 119160592 119161792 1201 + 0.810 0.990 0.685
ENSG00000231365 E020 15.0878917 0.001647104 1.379426e-03 1.918957e-02 1 119178644 119181389 2746 + 1.306 1.098 -0.736
ENSG00000231365 E021 0.7540070 0.014530230 1.313887e-01 3.845408e-01 1 119181390 119181461 72 + 0.100 0.333 2.152
ENSG00000231365 E022 4.8875594 0.006626762 2.722901e-01 5.660679e-01 1 119181462 119181977 516 + 0.827 0.712 -0.460
ENSG00000231365 E023 27.4523430 0.001048317 8.950936e-07 4.234735e-05 1 119181978 119183933 1956 + 1.560 1.338 -0.766
ENSG00000231365 E024 0.8443224 0.013107399 1.795668e-01 4.547687e-01 1 119233458 119234181 724 + 0.361 0.165 -1.492
ENSG00000231365 E025 0.9989353 0.012712314 2.193278e-01 5.059770e-01 1 119236632 119238057 1426 + 0.182 0.377 1.415
ENSG00000231365 E026 0.0000000       1 119261447 119261716 270 +      
ENSG00000231365 E027 0.0000000       1 119262902 119262944 43 +      
ENSG00000231365 E028 0.0000000       1 119275188 119275973 786 +      

Help

Please Click HERE to learn more details about the results from DEXseq.