ENSG00000236200

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000418149 ENSG00000236200 No_inf pgKDN_inf   lncRNA lncRNA 16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 1.4414756 1.2992026 0.0000000 1.2992026 0.0000000 -7.0325445 0.08171667 0.033825 0.000000 -0.033825 1.000000000 0.003709054   FALSE
ENST00000434346 ENSG00000236200 No_inf pgKDN_inf   lncRNA lncRNA 16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 0.6547232 1.9641697 0.0000000 0.8053061 0.0000000 -7.6251022 0.02290000 0.068700 0.000000 -0.068700 0.331003647 0.003709054 FALSE FALSE
ENST00000439057 ENSG00000236200 No_inf pgKDN_inf   lncRNA lncRNA 16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 1.4638730 2.2378017 1.0389841 0.4602126 0.6194135 -1.0995220 0.09459167 0.093075 0.120100 0.027025 1.000000000 0.003709054   FALSE
ENST00000453015 ENSG00000236200 No_inf pgKDN_inf   lncRNA lncRNA 16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 6.2269186 15.7534103 0.5313427 1.2055786 0.5313427 -4.8638938 0.30155000 0.612450 0.074075 -0.538375 0.003709054 0.003709054   FALSE
ENST00000659644 ENSG00000236200 No_inf pgKDN_inf   lncRNA lncRNA 16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 2.4734576 3.4610785 1.7233936 0.4192658 0.1861289 -1.0017847 0.21703333 0.140400 0.328750 0.188350 0.493221963 0.003709054   FALSE
ENST00000663424 ENSG00000236200 No_inf pgKDN_inf   lncRNA lncRNA 16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 0.6442021 0.3819468 1.4054365 0.1273607 0.5462903 1.8525171 0.11210833 0.014125 0.317000 0.302875 0.046447280 0.003709054   FALSE
MSTRG.898.5 ENSG00000236200 No_inf pgKDN_inf   lncRNA   16.17854 26.53566 6.67146 4.106801 2.076262 -1.990241 3.2738875 1.4380505 1.9723031 1.4380505 1.9723031 0.4530656 0.17011667 0.037425 0.160100 0.122675 0.838341425 0.003709054 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000236200 E001 1.0906348 0.012087830 0.014573673 0.10301995 1 43685123 43685347 225 - 0.529 0.162 -2.398
ENSG00000236200 E002 0.9904059 0.017777650 0.540364938 0.78842263 1 43699691 43699764 74 - 0.341 0.244 -0.661
ENSG00000236200 E003 0.8898290 0.155137611 0.114856980 0.35722832 1 43699765 43699839 75 - 0.000 0.313 11.190
ENSG00000236200 E004 3.7290553 0.004049528 0.750033492 0.90145751 1 43699840 43700063 224 - 0.660 0.620 -0.175
ENSG00000236200 E005 12.0193732 0.001701226 0.117972014 0.36279522 1 43700064 43700706 643 - 1.150 1.027 -0.442
ENSG00000236200 E006 3.8432291 0.038832030 0.362016524 0.65130472 1 43700707 43700752 46 - 0.730 0.604 -0.536
ENSG00000236200 E007 17.9108256 0.001162145 0.752331320 0.90245624 1 43700753 43702096 1344 - 1.238 1.218 -0.069
ENSG00000236200 E008 12.3892924 0.002214648 0.040697934 0.19573768 1 43702097 43702655 559 - 0.932 1.116 0.676
ENSG00000236200 E009 3.6273292 0.006144291 0.399407589 0.68321119 1 43702656 43702728 73 - 0.529 0.650 0.541
ENSG00000236200 E010 4.0437927 0.003739904 0.001833499 0.02386868 1 43703395 43703563 169 - 0.254 0.742 2.509
ENSG00000236200 E011 2.1298814 0.007069428 0.342062783 0.63344875 1 43703564 43703647 84 - 0.341 0.493 0.825
ENSG00000236200 E012 0.0000000       1 43704305 43704352 48 -      
ENSG00000236200 E013 0.0000000       1 43704353 43704457 105 -      
ENSG00000236200 E014 0.0000000       1 43704458 43704746 289 -      
ENSG00000236200 E015 5.1976725 0.002893631 0.228008169 0.51646174 1 43707059 43707371 313 - 0.843 0.705 -0.550
ENSG00000236200 E016 0.2363338 0.016051910 0.048832672   1 43708108 43708138 31 - 0.254 0.000 -12.914

Help

Please Click HERE to learn more details about the results from DEXseq.