ENSG00000241163

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000488545 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.04113649 0.12340947 0.00000000 0.05027175 0.00000000 -3.7377892 0.18048182 0.6617667 0.000000 -0.6617667 0.04038121 0.04038121 FALSE FALSE
ENST00000498432 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.02788311 0.03124256 0.01955307 0.01850211 0.01955307 -0.4808259 0.04903636 0.1542333 0.007475 -0.1467583   0.04038121 FALSE TRUE
ENST00000608654 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.06910831 0.06024425 0.04509195 0.06024425 0.04509195 -0.3505386 0.08113636 0.1839667 0.017275 -0.1666917 0.41715669 0.04038121 TRUE FALSE
ENST00000661666 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.04333022 0.00000000 0.12999065 0.00000000 0.12999065 3.8072586 0.02586364 0.0000000 0.071125 0.0711250 0.92862777 0.04038121   FALSE
ENST00000668763 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.45534594 0.00000000 0.50771399 0.00000000 0.12190925 5.6940834 0.27717273 0.0000000 0.356325 0.3563250 0.81138184 0.04038121 FALSE FALSE
ENST00000686889 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.50640494 0.00000000 0.65299265 0.00000000 0.25422257 6.0509210 0.21909091 0.0000000 0.312150 0.3121500 0.79290404 0.04038121   FALSE
ENST00000687511 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.06306892 0.00000000 0.18920675 0.00000000 0.18920675 4.3161946 0.02634545 0.0000000 0.072450 0.0724500 0.95763939 0.04038121 TRUE FALSE
ENST00000701668 ENSG00000241163 No_inf pgKDN_inf LINC00877 lncRNA lncRNA 1.472871 0.2148963 1.792036 0.090265 0.3273955 3.002296 0.04881731 0.00000000 0.14645193 0.00000000 0.14645193 3.9676475 0.03103636 0.0000000 0.085350 0.0853500 0.93617620 0.04038121   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000241163 E001 0.0000000       3 71943592 71943823 232 -      
ENSG00000241163 E002 0.0000000       3 71973783 71973974 192 -      
ENSG00000241163 E003 0.0000000       3 72035300 72035739 440 -      
ENSG00000241163 E004 0.0000000       3 72035740 72035741 2 -      
ENSG00000241163 E005 0.0000000       3 72035742 72035752 11 -      
ENSG00000241163 E006 0.0000000       3 72035753 72035754 2 -      
ENSG00000241163 E007 0.0000000       3 72035755 72035755 1 -      
ENSG00000241163 E008 0.0000000       3 72035756 72035759 4 -      
ENSG00000241163 E009 0.0000000       3 72035760 72035761 2 -      
ENSG00000241163 E010 0.2372762 0.02227161 0.584396534   3 72035762 72036173 412 - 0.103 0.000 -11.914
ENSG00000241163 E011 0.1176306 0.01312554 0.299602401   3 72036174 72036324 151 - 0.054 0.000 -12.029
ENSG00000241163 E012 0.3614886 0.02032402 0.110405060   3 72036325 72036520 196 - 0.103 0.161 0.750
ENSG00000241163 E013 0.1187032 0.01295310 0.298773872   3 72036837 72037530 694 - 0.054 0.000 -12.029
ENSG00000241163 E014 0.0000000       3 72054172 72054579 408 -      
ENSG00000241163 E015 0.0000000       3 72054580 72054649 70 -      
ENSG00000241163 E016 0.0000000       3 72054650 72055860 1211 -      
ENSG00000241163 E017 0.0000000       3 72055861 72055962 102 -      
ENSG00000241163 E018 0.0000000       3 72059438 72059441 4 -      
ENSG00000241163 E019 0.0000000       3 72059442 72059686 245 -      
ENSG00000241163 E020 0.0000000       3 72059687 72059830 144 -      
ENSG00000241163 E021 0.0000000       3 72059831 72059992 162 -      
ENSG00000241163 E022 0.1186381 0.01300476 0.299010280   3 72059993 72060109 117 - 0.054 0.000 -12.029
ENSG00000241163 E023 0.0000000       3 72060110 72060509 400 -      
ENSG00000241163 E024 0.1176306 0.01312554 0.299602401   3 72060510 72060611 102 - 0.054 0.000 -12.029
ENSG00000241163 E025 0.1170040 0.01284645 0.298880168   3 72060612 72060802 191 - 0.054 0.000 -12.029
ENSG00000241163 E026 0.1170040 0.01284645 0.298880168   3 72060803 72060840 38 - 0.054 0.000 -12.029
ENSG00000241163 E027 0.1170040 0.01284645 0.298880168   3 72060841 72060932 92 - 0.054 0.000 -12.029
ENSG00000241163 E028 0.0000000       3 72060933 72061094 162 -      
ENSG00000241163 E029 0.0000000       3 72092267 72092280 14 -      
ENSG00000241163 E030 0.1176306 0.01312554 0.299602401   3 72092281 72092474 194 - 0.054 0.000 -12.029
ENSG00000241163 E031 0.8269478 0.01471833 1.000000000 1.00000000 3 72097232 72097742 511 - 0.287 0.000 -13.851
ENSG00000241163 E032 1.8092066 0.01342608 0.009610134 0.07834929 3 72097743 72098752 1010 - 0.392 0.446 0.290
ENSG00000241163 E033 0.0000000       3 72098753 72098754 2 -      
ENSG00000241163 E034 0.9423177 0.01416317 0.765480578 0.90883020 3 72098755 72099011 257 - 0.316 0.000 -13.959
ENSG00000241163 E035 0.7093822 0.01666159 1.000000000 1.00000000 3 72099904 72100006 103 - 0.255 0.000 -13.706
ENSG00000241163 E036 0.2373413 0.01825708 0.583672992   3 72100007 72100010 4 - 0.103 0.000 -12.646
ENSG00000241163 E037 0.0000000       3 72100011 72100112 102 -      
ENSG00000241163 E038 0.3543453 0.01813752 1.000000000   3 72100169 72100259 91 - 0.146 0.000 -13.019
ENSG00000241163 E039 0.1170040 0.01284645 0.298880168   3 72100260 72100455 196 - 0.054 0.000 -12.029
ENSG00000241163 E040 0.1170040 0.01284645 0.298880168   3 72100788 72101074 287 - 0.054 0.000 -12.029
ENSG00000241163 E041 0.0000000       3 72178898 72178898 1 -      
ENSG00000241163 E042 0.0000000       3 72178899 72179271 373 -      
ENSG00000241163 E043 0.0000000       3 72179801 72179967 167 -      
ENSG00000241163 E044 0.0000000       3 72234148 72234244 97 -      
ENSG00000241163 E045 0.0000000       3 72235458 72235508 51 -      
ENSG00000241163 E046 0.0000000       3 72242435 72242565 131 -      
ENSG00000241163 E047 0.0000000       3 72256131 72256621 491 -      
ENSG00000241163 E048 0.0000000       3 72256622 72256769 148 -      
ENSG00000241163 E049 0.0000000       3 72256770 72257308 539 -      
ENSG00000241163 E050 0.0000000       3 72274735 72275107 373 -      
ENSG00000241163 E051 0.0000000       3 72275108 72275352 245 -      
ENSG00000241163 E052 0.0000000       3 72279391 72279503 113 -      

Help

Please Click HERE to learn more details about the results from DEXseq.