ENSG00000247982

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000501726 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA lncRNA 17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 2.2522102 1.7686260 0.5377896 0.2796898 0.3137611 -1.6990695 0.12845000 0.192000 0.032700 -0.159300 1.155275e-01 1.554452e-05   FALSE
ENST00000613170 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA lncRNA 17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 3.2742628 1.6661585 2.3937753 0.3442586 0.8813882 0.5201435 0.17820833 0.175700 0.146075 -0.029625 8.773101e-01 1.554452e-05 FALSE FALSE
ENST00000620766 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA lncRNA 17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 1.8984513 1.2073729 2.3182893 0.2988561 0.6627102 0.9354991 0.11977500 0.133175 0.146075 0.012900 9.873782e-01 1.554452e-05   FALSE
MSTRG.9606.1 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA   17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 0.7487475 0.6959916 0.8608495 0.1334699 0.3348292 0.3027724 0.05405000 0.078650 0.057800 -0.020850 8.675526e-01 1.554452e-05 FALSE FALSE
MSTRG.9606.2 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA   17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 1.7712999 0.9868292 1.1714061 0.7876320 0.5093589 0.2450867 0.10410000 0.118925 0.077400 -0.041525 9.290237e-01 1.554452e-05   FALSE
MSTRG.9606.3 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA   17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 2.7156861 0.0000000 4.2968111 0.0000000 0.6500987 8.7504762 0.14446667 0.000000 0.298400 0.298400 1.554452e-05 1.554452e-05   FALSE
MSTRG.9606.6 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA   17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 0.9933159 0.6323230 0.3193409 0.3653994 0.3193409 -0.9637174 0.05249167 0.061900 0.019225 -0.042675 7.780912e-01 1.554452e-05   FALSE
MSTRG.9606.7 ENSG00000247982 No_inf pgKDN_inf LINC00926 lncRNA   17.28476 9.242312 15.17944 0.5691903 1.168148 0.7151829 3.2818013 1.8964299 2.6228121 0.3878080 0.3189224 0.4657311 0.19243333 0.202450 0.181450 -0.021000 9.427764e-01 1.554452e-05 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000247982 E001 1.1240553 0.0115384842 0.066030246 0.25879767 15 57300113 57300267 155 + 0.167 0.446 1.938
ENSG00000247982 E002 0.2448930 0.0165880605 0.940429301   15 57300268 57300346 79 + 0.091 0.099 0.131
ENSG00000247982 E003 0.1186381 0.0120560611 0.590959478   15 57300347 57300364 18 + 0.091 0.000 -8.714
ENSG00000247982 E004 0.2451451 0.0165139341 0.942736354   15 57300365 57300399 35 + 0.091 0.099 0.131
ENSG00000247982 E005 16.3314840 0.0052953894 0.001152939 0.01670875 15 57300400 57300924 525 + 1.343 1.098 -0.869
ENSG00000247982 E006 3.6385816 0.0041112903 0.228759974 0.51748765 15 57301439 57301689 251 + 0.736 0.582 -0.658
ENSG00000247982 E007 10.6947286 0.0016395367 0.133290525 0.38779217 15 57301690 57302348 659 + 1.127 0.998 -0.468
ENSG00000247982 E008 6.2149149 0.0022973844 0.520031077 0.77459626 15 57302349 57302710 362 + 0.891 0.822 -0.268
ENSG00000247982 E009 2.9087331 0.1005949310 0.428675411 0.70713608 15 57302711 57302901 191 + 0.654 0.519 -0.606
ENSG00000247982 E010 3.0455741 0.0047639872 0.718058251 0.88653183 15 57302902 57303013 112 + 0.631 0.582 -0.217
ENSG00000247982 E011 2.4564686 0.0074350025 0.515181478 0.77142044 15 57303014 57303099 86 + 0.492 0.582 0.420
ENSG00000247982 E012 35.8348620 0.0186857640 0.928259118 0.97874428 15 57303100 57304724 1625 + 1.569 1.563 -0.018
ENSG00000247982 E013 17.8360978 0.0043514587 0.035144358 0.17945019 15 57304725 57305318 594 + 1.197 1.342 0.511
ENSG00000247982 E014 40.8709500 0.0004988985 0.019751010 0.12588643 15 57305319 57306299 981 + 1.571 1.668 0.330
ENSG00000247982 E015 13.0054891 0.0034637075 0.284128340 0.57788195 15 57306300 57306622 323 + 1.104 1.186 0.294
ENSG00000247982 E016 8.2124322 0.0037840264 0.451385436 0.72448954 15 57306623 57306746 124 + 0.929 0.998 0.260
ENSG00000247982 E017 22.0004322 0.0006359902 0.038749200 0.19045834 15 57306747 57307042 296 + 1.419 1.294 -0.434
ENSG00000247982 E018 4.4335868 0.0032919299 0.200715634 0.48280247 15 57307043 57307068 26 + 0.654 0.805 0.616
ENSG00000247982 E019 8.6481496 0.0093739207 0.530444077 0.78155910 15 57307069 57307541 473 + 1.015 0.951 -0.237
ENSG00000247982 E020 6.6307177 0.0022568952 0.371174487 0.65925459 15 57307542 57307769 228 + 0.836 0.926 0.345

Help

Please Click HERE to learn more details about the results from DEXseq.