ENSG00000261236

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000563210 ENSG00000261236 No_inf pgKDN_inf BOP1 protein_coding protein_coding_CDS_not_defined 88.05099 46.19323 96.07336 1.328047 11.67704 1.056293 4.286870 5.803388 2.137834 0.4643756 0.3742558 -1.4364969 0.06340000 0.125675 0.021950 -0.103725 0.0001678706 0.0001678706 FALSE FALSE
ENST00000568812 ENSG00000261236 No_inf pgKDN_inf BOP1 protein_coding retained_intron 88.05099 46.19323 96.07336 1.328047 11.67704 1.056293 3.726794 5.318354 2.672415 1.0032988 0.4786667 -0.9901577 0.05721667 0.114500 0.029275 -0.085225 0.0421149503 0.0001678706   FALSE
ENST00000569160 ENSG00000261236 No_inf pgKDN_inf BOP1 protein_coding retained_intron 88.05099 46.19323 96.07336 1.328047 11.67704 1.056293 4.722227 6.009734 2.533588 0.8534110 0.7999838 -1.2428345 0.06775833 0.129275 0.029350 -0.099925 0.0702623151 0.0001678706   TRUE
ENST00000569669 ENSG00000261236 No_inf pgKDN_inf BOP1 protein_coding protein_coding 88.05099 46.19323 96.07336 1.328047 11.67704 1.056293 60.410370 27.438755 71.546782 0.6264888 3.0223133 1.3823478 0.68700833 0.596775 0.768950 0.172175 0.2407482754 0.0001678706 FALSE TRUE
ENST00000616126 ENSG00000261236 No_inf pgKDN_inf BOP1 protein_coding miRNA 88.05099 46.19323 96.07336 1.328047 11.67704 1.056293 11.794742 0.000000 12.500922 0.0000000 12.5009223 10.2889724 0.08490833 0.000000 0.095375 0.095375 0.9867555337 0.0001678706   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000261236 E001 1.613563 0.5058676999 1.738402e-01 4.472824e-01 8 144262045 144262106 62 - 0.226 0.619 2.208
ENSG00000261236 E002 52.022383 0.0002869990 7.051559e-01 8.801566e-01 8 144262107 144262317 211 - 1.696 1.715 0.065
ENSG00000261236 E003 56.371104 0.0063536118 5.484293e-01 7.934693e-01 8 144262396 144262503 108 - 1.746 1.718 -0.096
ENSG00000261236 E004 33.459194 0.0040853989 8.072969e-01 9.288700e-01 8 144262588 144262615 28 - 1.520 1.508 -0.038
ENSG00000261236 E005 35.955558 0.0033451214 5.511894e-01 7.950748e-01 8 144262616 144262672 57 - 1.533 1.570 0.127
ENSG00000261236 E006 1.005135 0.0128626691 1.510828e-03 2.061868e-02 8 144262673 144262788 116 - 0.068 0.539 3.848
ENSG00000261236 E007 99.731940 0.0004666832 5.413945e-01 7.890710e-01 8 144262853 144263141 289 - 1.973 1.995 0.074
ENSG00000261236 E008 1.986348 0.0069860378 3.786960e-03 4.092285e-02 8 144263142 144263220 79 - 0.268 0.687 2.178
ENSG00000261236 E009 72.267248 0.0004232273 6.874147e-01 8.710768e-01 8 144263221 144263401 181 - 1.847 1.835 -0.040
ENSG00000261236 E010 4.580312 0.0055046997 9.980222e-05 2.371248e-03 8 144263402 144263477 76 - 0.508 0.974 1.925
ENSG00000261236 E011 57.070992 0.0002673046 1.196820e-01 3.656355e-01 8 144263478 144263610 133 - 1.762 1.700 -0.210
ENSG00000261236 E012 31.611950 0.0011152633 6.791479e-01 8.673936e-01 8 144263692 144263761 70 - 1.482 1.508 0.090
ENSG00000261236 E013 43.578561 0.0019258078 6.930465e-01 8.745823e-01 8 144263831 144263911 81 - 1.619 1.642 0.076
ENSG00000261236 E014 71.350709 0.0002204957 9.957816e-01 1.000000e+00 8 144263981 144264142 162 - 1.836 1.839 0.011
ENSG00000261236 E015 51.442599 0.0002719798 2.355366e-02 1.403074e-01 8 144264225 144264341 117 - 1.729 1.631 -0.332
ENSG00000261236 E016 48.012988 0.0010141407 1.160417e-01 3.591937e-01 8 144264342 144264437 96 - 1.691 1.620 -0.241
ENSG00000261236 E017 27.066849 0.0009209014 7.099244e-01 8.826632e-01 8 144264515 144264543 29 - 1.433 1.414 -0.067
ENSG00000261236 E018 42.443779 0.0005141370 1.759180e-01 4.499967e-01 8 144264544 144264616 73 - 1.592 1.659 0.228
ENSG00000261236 E019 55.254775 0.0007887289 8.265563e-01 9.371608e-01 8 144264714 144264831 118 - 1.730 1.724 -0.022
ENSG00000261236 E020 27.724383 0.0012683411 1.785503e-01 4.534409e-01 8 144264917 144264933 17 - 1.462 1.383 -0.273
ENSG00000261236 E021 60.535226 0.0030276043 6.415478e-01 8.478203e-01 8 144264934 144265071 138 - 1.758 1.783 0.083
ENSG00000261236 E022 9.099558 0.0083365169 1.594290e-11 1.751252e-09 8 144265072 144265459 388 - 0.628 1.300 2.547
ENSG00000261236 E023 9.485327 0.0015254440 1.435287e-14 2.360085e-12 8 144265583 144266086 504 - 0.610 1.330 2.728
ENSG00000261236 E024 41.198650 0.0003676615 2.991930e-02 1.626681e-01 8 144276224 144276304 81 - 1.637 1.531 -0.359
ENSG00000261236 E025 0.000000       8 144281684 144281933 250 -      
ENSG00000261236 E026 50.334397 0.0002867147 1.211384e-02 9.107940e-02 8 144289095 144289304 210 - 1.723 1.613 -0.375
ENSG00000261236 E027 23.121373 0.0028417462 1.742270e-01 4.478531e-01 8 144291272 144291438 167 - 1.390 1.300 -0.313

Help

Please Click HERE to learn more details about the results from DEXseq.