ENSG00000262879

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000572864 ENSG00000262879 No_inf pgKDN_inf   lncRNA lncRNA 8.452915 13.11044 6.69047 1.716875 1.179265 -0.9694819 0.6442230 1.93266897 0.0000000 1.12548877 0.00000000 -7.6018963 0.04201667 0.126050 0.000000 -0.126050 0.58987080 0.04931846    
ENST00000573341 ENSG00000262879 No_inf pgKDN_inf   lncRNA lncRNA 8.452915 13.11044 6.69047 1.716875 1.179265 -0.9694819 0.1110873 0.01782065 0.3154413 0.01782065 0.03574512 3.5481696 0.01800833 0.001275 0.052750 0.051475 0.04931846 0.04931846 TRUE  
ENST00000574741 ENSG00000262879 No_inf pgKDN_inf   lncRNA lncRNA 8.452915 13.11044 6.69047 1.716875 1.179265 -0.9694819 1.3370772 2.21124730 1.3535061 0.37311089 0.37408903 -0.7040489 0.14888333 0.170750 0.195475 0.024725 0.93486379 0.04931846 TRUE  
ENST00000658121 ENSG00000262879 No_inf pgKDN_inf   lncRNA lncRNA 8.452915 13.11044 6.69047 1.716875 1.179265 -0.9694819 2.2901528 3.44400669 2.0109982 0.13902995 0.10631696 -0.7732029 0.28572500 0.273350 0.327050 0.053700 0.89384471 0.04931846 FALSE  
ENST00000663210 ENSG00000262879 No_inf pgKDN_inf   lncRNA lncRNA 8.452915 13.11044 6.69047 1.716875 1.179265 -0.9694819 1.3249788 1.91264977 0.8779813 0.16169859 0.35022161 -1.1144947 0.17734167 0.155175 0.162300 0.007125 0.95561838 0.04931846    
ENST00000701385 ENSG00000262879 No_inf pgKDN_inf   lncRNA lncRNA 8.452915 13.11044 6.69047 1.716875 1.179265 -0.9694819 0.5572564 0.84961252 0.0000000 0.84961252 0.00000000 -6.4256146 0.06264167 0.048950 0.000000 -0.048950 0.93367101 0.04931846    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000262879 E001 0.3723465 0.016826633 0.828604231   17 46983287 46983416 130 - 0.109 0.152 0.549
ENSG00000262879 E002 0.1187032 0.011873949 0.373814208   17 46983417 46983461 45 - 0.109 0.000 -12.973
ENSG00000262879 E003 0.4994824 0.035185526 0.519062131   17 46983462 46984044 583 - 0.109 0.212 1.134
ENSG00000262879 E004 0.1186381 0.011947678 0.373589268   17 46984045 46984065 21 - 0.109 0.000 -12.973
ENSG00000262879 E005 0.0000000       17 46984066 46984069 4 -      
ENSG00000262879 E006 0.0000000       17 46998062 46998544 483 -      
ENSG00000262879 E007 0.0000000       17 46998700 46998817 118 -      
ENSG00000262879 E008 0.1272623 0.012553419 0.772234172   17 47005610 47005784 175 - 0.000 0.083 11.673
ENSG00000262879 E009 0.0000000       17 47007840 47007884 45 -      
ENSG00000262879 E010 0.2539903 0.016467707 0.389512968   17 47008993 47009256 264 - 0.000 0.152 12.515
ENSG00000262879 E011 0.9873248 0.012625102 0.824744684 0.93642840 17 47009257 47010041 785 - 0.269 0.311 0.286
ENSG00000262879 E012 1.6387697 0.049745010 0.009838221 0.07942144 17 47010070 47010736 667 - 0.109 0.546 3.134
ENSG00000262879 E013 0.6270271 0.015235223 0.323008402 0.61581142 17 47016085 47016148 64 - 0.109 0.264 1.549
ENSG00000262879 E014 1.7597717 0.018377744 0.030326778 0.16386763 17 47016149 47017660 1512 - 0.197 0.546 2.134
ENSG00000262879 E015 0.0000000       17 47017661 47017662 2 -      
ENSG00000262879 E016 0.0000000       17 47017663 47017713 51 -      
ENSG00000262879 E017 0.0000000       17 47017714 47017715 2 -      
ENSG00000262879 E018 0.0000000       17 47017716 47017716 1 -      
ENSG00000262879 E019 0.0000000       17 47017717 47017717 1 -      
ENSG00000262879 E020 0.0000000       17 47017718 47017725 8 -      
ENSG00000262879 E021 0.0000000       17 47017726 47018465 740 -      
ENSG00000262879 E022 0.0000000       17 47021190 47021581 392 -      
ENSG00000262879 E023 0.6258335 0.015255479 0.322625151 0.61558951 17 47021582 47021721 140 - 0.109 0.264 1.549
ENSG00000262879 E024 0.7444716 0.014327345 0.686491246 0.87049699 17 47033278 47033319 42 - 0.197 0.264 0.549
ENSG00000262879 E025 0.9639991 0.013353321 0.055310544 0.23435611 17 47033320 47033381 62 - 0.434 0.152 -2.036
ENSG00000262879 E026 0.3809057 0.016063291 0.191196356   17 47033382 47033646 265 - 0.000 0.212 12.985
ENSG00000262879 E027 0.1271363 0.012551310 0.772219256   17 47035044 47035126 83 - 0.000 0.083 11.673
ENSG00000262879 E028 7.6837896 0.002260961 0.209860038 0.49428321 17 47048163 47051315 3153 - 0.846 0.982 0.514
ENSG00000262879 E029 11.0960915 0.040905548 0.997216745 1.00000000 17 47051316 47053461 2146 - 1.064 1.083 0.068
ENSG00000262879 E030 5.0180400 0.003143123 0.193810996 0.47365093 17 47053462 47054117 656 - 0.846 0.715 -0.521
ENSG00000262879 E031 1.3528696 0.012596356 0.788999512 0.91898413 17 47054118 47054161 44 - 0.386 0.353 -0.188
ENSG00000262879 E032 2.2151891 0.008291728 0.793286682 0.92116932 17 47054162 47054213 52 - 0.517 0.490 -0.129
ENSG00000262879 E033 12.5289227 0.001444896 0.296943992 0.59018932 17 47054214 47056206 1993 - 1.160 1.097 -0.224
ENSG00000262879 E034 3.8908470 0.007899135 0.040738776 0.19584679 17 47056207 47056455 249 - 0.809 0.571 -0.998
ENSG00000262879 E035 0.8343187 0.020883655 0.016503260 0.11186211 17 47056456 47056459 4 - 0.434 0.083 -3.036
ENSG00000262879 E036 6.9891604 0.003193960 0.224170861 0.51174262 17 47056460 47056753 294 - 0.955 0.849 -0.400
ENSG00000262879 E037 1.2435482 0.170726870 0.573683126 0.80897915 17 47067414 47067537 124 - 0.269 0.392 0.772
ENSG00000262879 E038 0.1272623 0.012553419 0.772234172   17 47071446 47071448 3 - 0.000 0.083 11.673
ENSG00000262879 E039 0.2537694 0.016314125 0.389881980   17 47071449 47071473 25 - 0.000 0.152 12.515
ENSG00000262879 E040 0.5075387 0.031522966 0.100038469 0.33052274 17 47071474 47071612 139 - 0.000 0.264 13.298
ENSG00000262879 E041 0.0000000       17 47071613 47071650 38 -      
ENSG00000262879 E042 1.0996024 0.012479474 0.394239007 0.67904342 17 47072472 47072559 88 - 0.386 0.264 -0.773
ENSG00000262879 E043 0.1271363 0.012551310 0.772219256   17 47072560 47072633 74 - 0.000 0.083 11.673
ENSG00000262879 E044 2.3339857 0.006758977 0.597224050 0.82315337 17 47081920 47082350 431 - 0.553 0.490 -0.299
ENSG00000262879 E045 2.4692121 0.009812253 0.904507295 0.96928834 17 47099835 47099835 1 - 0.517 0.546 0.134
ENSG00000262879 E046 5.0909303 0.003082455 0.193871538 0.47371302 17 47099836 47100021 186 - 0.674 0.836 0.656
ENSG00000262879 E047 2.1053691 0.008709951 0.606193026 0.82852175 17 47100022 47100254 233 - 0.434 0.519 0.423
ENSG00000262879 E048 0.0000000       17 47100255 47100323 69 -      

Help

Please Click HERE to learn more details about the results from DEXseq.