ENSG00000263072

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000570901 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.2332534 0.4165478 0.0000000 0.4165478 0.00000000 -5.4146354 0.03079167 0.058650 0.000000 -0.058650 0.90207189 0.01764098   FALSE
ENST00000571963 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.1889820 0.0000000 0.3718690 0.0000000 0.13188231 5.2550061 0.02704167 0.000000 0.057900 0.057900 0.19214901 0.01764098   FALSE
ENST00000575089 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.3440327 0.0000000 0.7192441 0.0000000 0.71924408 6.1883299 0.04436667 0.000000 0.096025 0.096025 0.82650141 0.01764098   FALSE
ENST00000576943 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.6205869 1.3035950 0.0000000 0.4671865 0.00000000 -7.0373767 0.07353333 0.132350 0.000000 -0.132350 0.01764098 0.01764098 FALSE TRUE
ENST00000653148 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 1.0326347 1.3683919 1.0322028 0.2828899 0.21861190 -0.4033501 0.13882500 0.162125 0.163975 0.001850 1.00000000 0.01764098   FALSE
ENST00000671396 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.9184875 1.4923020 0.6541298 0.5088203 0.38855341 -1.1776377 0.12856667 0.184150 0.114800 -0.069350 0.83718663 0.01764098   FALSE
ENST00000701888 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.7119311 0.8630681 0.6917167 0.3210485 0.08753286 -0.3152054 0.09102500 0.088350 0.102700 0.014350 0.93675780 0.01764098   FALSE
ENST00000702474 ENSG00000263072 No_inf pgKDN_inf   lncRNA lncRNA 7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 1.5746060 1.8619096 1.5453640 0.3865072 0.32920725 -0.2672585 0.19802500 0.199500 0.225250 0.025750 0.93536115 0.01764098   FALSE
MSTRG.10514.39 ENSG00000263072 No_inf pgKDN_inf   lncRNA   7.72194 9.224144 6.706042 1.373477 0.5487656 -0.459367 0.7233043 0.0000000 0.5557274 0.0000000 0.55572740 5.8220351 0.09576667 0.000000 0.072500 0.072500 0.82299884 0.01764098   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000263072 E001 0.0000000       16 3100696 3100716 21 -      
ENSG00000263072 E002 0.1268540 0.012512919 0.722430301   16 3100717 3101477 761 - 0.000 0.084 10.649
ENSG00000263072 E003 0.3714026 0.017000792 0.787509770   16 3110460 3110511 52 - 0.108 0.154 0.598
ENSG00000263072 E004 0.2441403 0.016519447 0.811252302   16 3110512 3110518 7 - 0.108 0.084 -0.402
ENSG00000263072 E005 0.1170040 0.011926875 0.395570616   16 3110519 3110793 275 - 0.108 0.000 -14.395
ENSG00000263072 E006 0.1268540 0.012512919 0.722430301   16 3110794 3110954 161 - 0.000 0.084 13.131
ENSG00000263072 E007 0.3808443 0.018330023 0.176824602   16 3112283 3112489 207 - 0.000 0.215 14.392
ENSG00000263072 E008 0.4899121 0.016679682 0.762278798   16 3112936 3113206 271 - 0.194 0.154 -0.402
ENSG00000263072 E009 0.1265070 0.013225516 0.721796880   16 3113207 3113265 59 - 0.000 0.084 13.131
ENSG00000263072 E010 0.9977019 0.043954601 0.316186444 0.60906460 16 3113266 3114794 1529 - 0.194 0.357 1.183
ENSG00000263072 E011 0.1268540 0.012512919 0.722430301   16 3114795 3114882 88 - 0.000 0.084 13.131
ENSG00000263072 E012 0.1268540 0.012512919 0.722430301   16 3114883 3114887 5 - 0.000 0.084 13.131
ENSG00000263072 E013 0.6085266 0.018954422 0.431977574 0.70952177 16 3114968 3116125 1158 - 0.266 0.154 -0.987
ENSG00000263072 E014 0.2442663 0.016712872 0.812325546   16 3116126 3116455 330 - 0.108 0.084 -0.402
ENSG00000263072 E015 0.0000000       16 3116456 3116519 64 -      
ENSG00000263072 E016 0.3544103 0.037713220 0.058460378   16 3123756 3123756 1 - 0.266 0.000 -15.564
ENSG00000263072 E017 0.3544103 0.037713220 0.058460378   16 3123757 3123989 233 - 0.266 0.000 -15.564
ENSG00000263072 E018 0.0000000       16 3123990 3124486 497 -      
ENSG00000263072 E019 0.1268540 0.012512919 0.722430301   16 3124487 3124898 412 - 0.000 0.084 13.131
ENSG00000263072 E020 0.0000000       16 3125258 3125528 271 -      
ENSG00000263072 E021 0.0000000       16 3125529 3125530 2 -      
ENSG00000263072 E022 0.0000000       16 3125531 3125542 12 -      
ENSG00000263072 E023 0.0000000       16 3125543 3125582 40 -      
ENSG00000263072 E024 0.0000000       16 3125583 3125599 17 -      
ENSG00000263072 E025 0.1271363 0.012529879 0.722431880   16 3125600 3125962 363 - 0.000 0.084 13.131
ENSG00000263072 E026 0.0000000       16 3125963 3125966 4 -      
ENSG00000263072 E027 1.3533338 0.488089852 0.761483696 0.90689974 16 3126386 3128671 2286 - 0.381 0.358 -0.138
ENSG00000263072 E028 0.1272623 0.012701173 0.722111788   16 3128672 3128861 190 - 0.000 0.084 13.131
ENSG00000263072 E029 2.5765819 0.006432150 0.632077561 0.84230156 16 3128862 3129247 386 - 0.581 0.524 -0.264
ENSG00000263072 E030 1.8767698 0.139876572 0.109473571 0.34727321 16 3129248 3129310 63 - 0.266 0.551 1.599
ENSG00000263072 E031 1.9865045 0.007320674 0.355040900 0.64477447 16 3129311 3129420 110 - 0.381 0.524 0.736
ENSG00000263072 E032 1.1070892 0.012936075 0.902569104 0.96886466 16 3129421 3129457 37 - 0.327 0.315 -0.080
ENSG00000263072 E033 1.1070892 0.012936075 0.902569104 0.96886466 16 3129458 3129460 3 - 0.327 0.315 -0.080
ENSG00000263072 E034 5.3138540 0.002807849 0.469860792 0.73785819 16 3129461 3129653 193 - 0.740 0.829 0.353
ENSG00000263072 E035 1.5889524 0.009145078 0.406651728 0.68924152 16 3129654 3130160 507 - 0.473 0.357 -0.624
ENSG00000263072 E036 0.2455571 0.016790008 0.810469597   16 3131405 3131457 53 - 0.108 0.084 -0.402
ENSG00000263072 E037 0.1271363 0.012529879 0.722431880   16 3131458 3131462 5 - 0.000 0.084 13.131
ENSG00000263072 E038 0.6164864 0.016011064 0.915649238 0.97356552 16 3131463 3131600 138 - 0.194 0.215 0.183
ENSG00000263072 E039 0.3624961 0.017033516 0.411275288   16 3131601 3131666 66 - 0.194 0.084 -1.402
ENSG00000263072 E040 0.1268540 0.012512919 0.722430301   16 3131667 3131667 1 - 0.000 0.084 13.131
ENSG00000263072 E041 0.6047199 0.571770008 0.666576973 0.86133908 16 3131668 3131746 79 - 0.265 0.154 -0.983
ENSG00000263072 E042 2.1907751 0.008807844 0.263982108 0.55712061 16 3131747 3131844 98 - 0.581 0.432 -0.724
ENSG00000263072 E043 1.8258207 0.008164886 0.170162424 0.44229109 16 3131845 3131921 77 - 0.548 0.357 -0.987
ENSG00000263072 E044 3.1023815 0.005183166 0.278691078 0.57190947 16 3131922 3132018 97 - 0.512 0.665 0.686
ENSG00000263072 E045 2.7100808 0.005943553 0.884501565 0.96109365 16 3132019 3132103 85 - 0.548 0.576 0.129
ENSG00000263072 E046 2.2326268 0.008418801 0.431028986 0.70873197 16 3132104 3132322 219 - 0.429 0.551 0.598
ENSG00000263072 E047 2.5682160 0.005870730 0.354214371 0.64395449 16 3132323 3132849 527 - 0.612 0.495 -0.539
ENSG00000263072 E048 1.3513263 0.010818673 0.839094817 0.94225863 16 3132850 3132942 93 - 0.381 0.357 -0.139
ENSG00000263072 E049 0.7354042 0.015225275 0.710096951 0.88278083 16 3132943 3132945 3 - 0.266 0.215 -0.402
ENSG00000263072 E050 2.8228569 0.056910825 0.652028513 0.85344232 16 3132946 3133194 249 - 0.612 0.551 -0.277
ENSG00000263072 E051 2.6108530 0.095661286 0.254279040 0.54598562 16 3133195 3133367 173 - 0.429 0.623 0.921
ENSG00000263072 E052 2.8623922 0.102465192 0.151826071 0.41545010 16 3133368 3133709 342 - 0.429 0.665 1.102
ENSG00000263072 E053 2.9766902 0.129415356 0.539586465 0.78797584 16 3134229 3134508 280 - 0.512 0.644 0.597
ENSG00000263072 E054 0.9794559 0.012591858 0.665423444 0.86082188 16 3134509 3134629 121 - 0.327 0.268 -0.402
ENSG00000263072 E055 0.8430352 0.013653946 0.121842511 0.36939510 16 3134630 3134633 4 - 0.381 0.154 -1.724
ENSG00000263072 E056 2.5323079 0.007297105 0.006765894 0.06164377 16 3134634 3134892 259 - 0.718 0.357 -1.724
ENSG00000263072 E057 0.3731018 0.017122701 0.788093830   16 3142806 3143603 798 - 0.108 0.154 0.598
ENSG00000263072 E058 0.0000000       16 3143604 3143734 131 -      

Help

Please Click HERE to learn more details about the results from DEXseq.