ENSG00000265148

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000578025 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA lncRNA 9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 0.9572965 0.0000000 1.5330986 0.0000000 0.5724215 7.269686 0.10613333 0.000000 0.195475 0.195475 0.03429557 0.03429557   FALSE
ENST00000579859 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA lncRNA 9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 2.2962086 3.9385592 1.3881087 1.4945124 1.3881087 -1.497850 0.23975000 0.412225 0.183400 -0.228825 0.43707656 0.03429557   FALSE
ENST00000580022 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA lncRNA 9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 1.2940839 0.6138738 1.7373108 0.4186533 1.4390893 1.485810 0.14378333 0.071325 0.216925 0.145600 0.92694990 0.03429557 TRUE FALSE
ENST00000582348 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA lncRNA 9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 0.6184505 0.0000000 0.0000000 0.0000000 0.0000000 0.000000 0.05155833 0.000000 0.000000 0.000000   0.03429557   FALSE
ENST00000700895 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA lncRNA 9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 0.4130937 1.2392811 0.0000000 1.2392811 0.0000000 -6.964954 0.02852500 0.085575 0.000000 -0.085575 0.86252247 0.03429557   FALSE
MSTRG.12994.14 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA   9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 1.1765787 0.9648642 1.6471361 0.8276569 0.8544464 0.765419 0.13652500 0.098900 0.209925 0.111025 0.78349262 0.03429557   FALSE
MSTRG.12994.18 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA   9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 1.7974120 2.5593945 0.6902446 1.4975987 0.4032793 -1.875498 0.17590833 0.237900 0.088650 -0.149250 0.94015740 0.03429557   FALSE
MSTRG.12994.5 ENSG00000265148 No_inf pgKDN_inf TSPOAP1-AS1 lncRNA   9.71676 10.33333 7.804506 1.454261 0.1354197 -0.4044743 0.4453808 0.0000000 0.4629354 0.0000000 0.4629354 5.563571 0.04754167 0.000000 0.061125 0.061125 0.82947847 0.03429557 TRUE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000265148 E001 0.1186381 0.0119976020 0.417769929   17 58324472 58324627 156 + 0.106 0.000 -9.689
ENSG00000265148 E002 0.0000000       17 58325450 58325575 126 +      
ENSG00000265148 E003 0.0000000       17 58325576 58325728 153 +      
ENSG00000265148 E004 0.0000000       17 58325919 58326036 118 +      
ENSG00000265148 E005 0.0000000       17 58328050 58328121 72 +      
ENSG00000265148 E006 0.0000000       17 58328925 58328937 13 +      
ENSG00000265148 E007 0.0000000       17 58328938 58328942 5 +      
ENSG00000265148 E008 0.0000000       17 58328943 58329014 72 +      
ENSG00000265148 E009 0.1186381 0.0119976020 0.417769929   17 58329015 58329074 60 + 0.106 0.000 -11.866
ENSG00000265148 E010 0.6168947 0.0148103112 0.862529403 0.95258570 17 58329075 58329604 530 + 0.192 0.217 0.224
ENSG00000265148 E011 0.0000000       17 58329605 58329664 60 +      
ENSG00000265148 E012 0.3723461 0.2796337944 0.795096108   17 58329665 58329918 254 + 0.106 0.156 0.639
ENSG00000265148 E013 0.3795211 0.4584938401 0.352286831   17 58330682 58330886 205 + 0.000 0.217 11.569
ENSG00000265148 E014 0.0000000       17 58337203 58337214 12 +      
ENSG00000265148 E015 0.2362687 0.0159463625 0.168275519   17 58337215 58337245 31 + 0.192 0.000 -12.717
ENSG00000265148 E016 1.2302951 0.0124897131 0.811996211 0.93080135 17 58337246 58337307 62 + 0.324 0.361 0.224
ENSG00000265148 E017 1.2302951 0.0124897131 0.811996211 0.93080135 17 58337308 58337310 3 + 0.324 0.361 0.224
ENSG00000265148 E018 0.9956605 0.0485256264 0.295637099 0.58869829 17 58337311 58337335 25 + 0.192 0.361 1.224
ENSG00000265148 E019 0.9956605 0.0485256264 0.295637099 0.58869829 17 58337336 58337348 13 + 0.192 0.361 1.224
ENSG00000265148 E020 1.1227968 0.0156111961 0.181488341 0.45747458 17 58337349 58337357 9 + 0.192 0.400 1.447
ENSG00000265148 E021 2.5750089 0.0061196503 0.719261509 0.88680749 17 58337358 58337447 90 + 0.577 0.528 -0.223
ENSG00000265148 E022 6.9225505 0.0028120612 0.005907591 0.05586885 17 58337448 58337679 232 + 1.030 0.760 -1.030
ENSG00000265148 E023 0.8604067 0.1013979852 0.976924542 0.99636228 17 58339206 58339242 37 + 0.263 0.270 0.054
ENSG00000265148 E024 2.5807764 0.0150803091 0.931835053 0.98013197 17 58339243 58339447 205 + 0.544 0.555 0.055
ENSG00000265148 E025 0.3726284 0.0170073108 0.749846297   17 58346280 58346343 64 + 0.106 0.156 0.639
ENSG00000265148 E026 2.4466520 0.0092343864 0.581461135 0.81348149 17 58351735 58351743 9 + 0.577 0.500 -0.361
ENSG00000265148 E027 8.0981391 0.0026175868 0.587178285 0.81688005 17 58351744 58351914 171 + 0.982 0.932 -0.186
ENSG00000265148 E028 1.9835134 0.0082856132 0.307439975 0.60061663 17 58351999 58352195 197 + 0.378 0.528 0.777
ENSG00000265148 E029 6.0734039 0.0350665184 0.250327772 0.54141148 17 58352196 58352581 386 + 0.757 0.898 0.551
ENSG00000265148 E030 35.9385703 0.0006145157 0.759421888 0.90558842 17 58352582 58353719 1138 + 1.556 1.567 0.037
ENSG00000265148 E031 0.0000000       17 58394906 58395010 105 +      
ENSG00000265148 E032 0.0000000       17 58415466 58415766 301 +      

Help

Please Click HERE to learn more details about the results from DEXseq.