ENSG00000274922

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000612143 ENSG00000274922 No_inf pgKDN_inf   lncRNA lncRNA 2.097459 2.570176 1.224662 0.6974431 0.4066306 -1.063353 0.3495145 0.3813455 0.3907932 0.1275872 0.07664914 0.03441532 0.2953083 0.210550 0.56760 0.357050 0.68048100 0.03499189 FALSE FALSE
ENST00000686624 ENSG00000274922 No_inf pgKDN_inf   lncRNA lncRNA 2.097459 2.570176 1.224662 0.6974431 0.4066306 -1.063353 0.4101907 0.3535766 0.0000000 0.2356293 0.00000000 -5.18418740 0.1488000 0.146675 0.00000 -0.146675 0.78771600 0.03499189 FALSE FALSE
ENST00000688937 ENSG00000274922 No_inf pgKDN_inf   lncRNA lncRNA 2.097459 2.570176 1.224662 0.6974431 0.4066306 -1.063353 0.1406020 0.0000000 0.4218060 0.0000000 0.42180605 5.43231154 0.0723500 0.000000 0.21705 0.217050 0.74008490 0.03499189 FALSE FALSE
ENST00000689336 ENSG00000274922 No_inf pgKDN_inf   lncRNA lncRNA 2.097459 2.570176 1.224662 0.6974431 0.4066306 -1.063353 0.7131981 1.1660243 0.0000000 0.2266062 0.00000000 -6.87777408 0.3010750 0.492525 0.00000 -0.492525 0.03499189 0.03499189   FALSE
ENST00000700939 ENSG00000274922 No_inf pgKDN_inf   lncRNA lncRNA 2.097459 2.570176 1.224662 0.6974431 0.4066306 -1.063353 0.3604306 0.6692293 0.4120625 0.6692293 0.41206253 -0.68644203 0.1218667 0.150250 0.21535 0.065100 0.91580148 0.03499189 FALSE FALSE
ENST00000700971 ENSG00000274922 No_inf pgKDN_inf   lncRNA lncRNA 2.097459 2.570176 1.224662 0.6974431 0.4066306 -1.063353 0.1235227 0.0000000 0.0000000 0.0000000 0.00000000 0.00000000 0.0606000 0.000000 0.00000 0.000000   0.03499189   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000274922 E001 1.4830941 0.584561078 0.9908353372 1.00000000 13 112686769 112687728 960 - 0.380 0.374 -0.033
ENSG00000274922 E002 0.9892412 0.012818354 0.9246606621 0.97715075 13 112687729 112688070 342 - 0.312 0.268 -0.297
ENSG00000274922 E003 0.7093172 0.014538681 0.0008834384 0.01364472 13 112688071 112688183 113 - 0.492 0.000 -14.677
ENSG00000274922 E004 0.5997389 0.016502897 0.0429875096 0.20218787 13 112688184 112688294 111 - 0.380 0.069 -3.034
ENSG00000274922 E005 0.2447669 0.017533097 0.6487520322   13 112688295 112688295 1 - 0.130 0.069 -1.034
ENSG00000274922 E006 5.2239540 0.005474736 0.2308295281 0.51935345 13 112688296 112688779 484 - 0.716 0.788 0.288
ENSG00000274922 E007 1.3605188 0.011501414 0.9683280791 0.99364123 13 112688780 112688869 90 - 0.380 0.342 -0.226
ENSG00000274922 E008 2.3961455 0.008160436 0.0074124240 0.06565638 13 112688870 112689151 282 - 0.231 0.592 2.054
ENSG00000274922 E009 1.3520816 0.009939561 0.4981904255 0.75869771 13 112689152 112689404 253 - 0.440 0.307 -0.771
ENSG00000274922 E010 0.0000000       13 112689405 112689491 87 -      
ENSG00000274922 E011 0.6076073 0.019064128 0.2667854859 0.56019870 13 112689492 112689644 153 - 0.312 0.128 -1.619
ENSG00000274922 E012 0.2539903 0.017028829 0.5034157164   13 112689645 112689662 18 - 0.000 0.128 11.219
ENSG00000274922 E013 0.4995474 0.017552436 0.6763412542   13 112689663 112689760 98 - 0.130 0.180 0.551
ENSG00000274922 E014 0.2539903 0.017028829 0.5034157164   13 112689761 112689785 25 - 0.000 0.128 11.219
ENSG00000274922 E015 0.0000000       13 112689786 112689791 6 -      
ENSG00000274922 E016 0.0000000       13 112689792 112689840 49 -      
ENSG00000274922 E017 0.1186381 0.012513112 0.2916859385   13 112689841 112689847 7 - 0.130 0.000 -12.872
ENSG00000274922 E018 0.1186381 0.012513112 0.2916859385   13 112689848 112689859 12 - 0.130 0.000 -12.872

Help

Please Click HERE to learn more details about the results from DEXseq.