ENSG00000278540

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000614438 ENSG00000278540 No_inf pgKDN_inf ACACA protein_coding protein_coding 18.70526 12.90948 22.53941 0.1813959 0.7278815 0.8035411 1.397259 0.6914673 2.336900 0.2727017 0.4922117 1.74230861 0.07006667 0.053575 0.104050 0.050475 7.125915e-01 3.704804e-05 FALSE TRUE
ENST00000619546 ENSG00000278540 No_inf pgKDN_inf ACACA protein_coding protein_coding 18.70526 12.90948 22.53941 0.1813959 0.7278815 0.8035411 2.259108 1.9228771 3.507261 0.6477799 1.3253456 0.86370233 0.12344167 0.148675 0.159925 0.011250 1.000000e+00 3.704804e-05 FALSE TRUE
MSTRG.12594.1 ENSG00000278540 No_inf pgKDN_inf ACACA protein_coding   18.70526 12.90948 22.53941 0.1813959 0.7278815 0.8035411 2.198754 0.8473998 2.696637 0.4134517 0.4781708 1.65846176 0.11209167 0.065500 0.121400 0.055900 7.052847e-01 3.704804e-05 FALSE TRUE
MSTRG.12594.3 ENSG00000278540 No_inf pgKDN_inf ACACA protein_coding   18.70526 12.90948 22.53941 0.1813959 0.7278815 0.8035411 1.697940 0.0000000 3.582661 0.0000000 0.5024500 8.48890892 0.07752500 0.000000 0.158725 0.158725 3.704804e-05 3.704804e-05 FALSE TRUE
MSTRG.12594.9 ENSG00000278540 No_inf pgKDN_inf ACACA protein_coding   18.70526 12.90948 22.53941 0.1813959 0.7278815 0.8035411 9.201208 8.4846609 7.940847 0.4310162 1.8742891 -0.09544777 0.51753333 0.657325 0.349175 -0.308150 9.924192e-02 3.704804e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000278540 E001 0.1265070 0.0122314574 2.988346e-01   17 37084954 37084991 38 - 0.000 0.121 10.688
ENSG00000278540 E002 0.1265070 0.0122314574 2.988346e-01   17 37084992 37084993 2 - 0.000 0.121 13.342
ENSG00000278540 E003 0.2451451 0.0159644022 6.648962e-01   17 37084994 37084997 4 - 0.074 0.121 0.792
ENSG00000278540 E004 0.2451451 0.0159644022 6.648962e-01   17 37084998 37084998 1 - 0.074 0.121 0.792
ENSG00000278540 E005 1.3328796 0.0099345289 9.966728e-01 1.000000e+00 17 37084999 37085027 29 - 0.362 0.359 -0.016
ENSG00000278540 E006 209.3685586 0.0001256415 1.399312e-12 1.784173e-10 17 37085028 37086816 1789 - 2.260 2.382 0.410
ENSG00000278540 E007 10.5362187 0.0014449410 7.067722e-01 8.810223e-01 17 37086817 37086875 59 - 1.065 1.028 -0.134
ENSG00000278540 E008 5.5724904 0.0024987506 8.174295e-01 9.336088e-01 17 37086876 37086879 4 - 0.818 0.789 -0.115
ENSG00000278540 E009 24.2013004 0.0078639154 4.189329e-01 6.987051e-01 17 37086880 37087176 297 - 1.368 1.422 0.188
ENSG00000278540 E010 8.1745342 0.0017105456 1.641925e-01 4.334011e-01 17 37087177 37087221 45 - 0.897 1.028 0.489
ENSG00000278540 E011 12.8993268 0.0046048913 3.997588e-01 6.834868e-01 17 37087222 37087319 98 - 1.105 1.172 0.241
ENSG00000278540 E012 17.3142522 0.0008628998 7.688052e-02 2.835196e-01 17 37087320 37087439 120 - 1.201 1.322 0.424
ENSG00000278540 E013 20.4299280 0.0006485875 2.769425e-01 5.703829e-01 17 37088938 37089074 137 - 1.292 1.360 0.235
ENSG00000278540 E014 21.5645948 0.0020699154 5.840604e-02 2.420153e-01 17 37096996 37097166 171 - 1.292 1.412 0.415
ENSG00000278540 E015 18.9696034 0.0066971102 2.111453e-01 4.960017e-01 17 37097830 37097984 155 - 1.253 1.341 0.307
ENSG00000278540 E016 14.0023199 0.0171377545 1.882942e-01 4.666388e-01 17 37111531 37111643 113 - 1.117 1.233 0.414
ENSG00000278540 E017 16.1905705 0.0008867989 2.425690e-01 5.321729e-01 17 37113088 37113265 178 - 1.191 1.272 0.288
ENSG00000278540 E018 12.7565641 0.0011468256 5.802331e-01 8.127758e-01 17 37121355 37121490 136 - 1.111 1.152 0.149
ENSG00000278540 E019 12.3486437 0.0018027788 1.421304e-02 1.013064e-01 17 37122531 37122627 97 - 1.028 1.225 0.706
ENSG00000278540 E020 0.0000000       17 37122628 37122794 167 -      
ENSG00000278540 E021 9.7911971 0.0034058299 1.563284e-02 1.081195e-01 17 37125698 37125794 97 - 0.926 1.142 0.792
ENSG00000278540 E022 9.2238167 0.0015356548 7.556560e-01 9.036841e-01 17 37129365 37129485 121 - 0.989 1.014 0.095
ENSG00000278540 E023 14.6325588 0.0010014023 4.398735e-01 7.156819e-01 17 37130075 37130218 144 - 1.206 1.142 -0.226
ENSG00000278540 E024 9.3637648 0.0016821155 2.351362e-02 1.401318e-01 17 37149864 37149974 111 - 1.078 0.852 -0.843
ENSG00000278540 E025 7.5044212 0.0162526602 8.956546e-01 9.656225e-01 17 37151301 37151421 121 - 0.926 0.908 -0.070
ENSG00000278540 E026 5.1692169 0.0097232802 1.462732e-01 4.072424e-01 17 37155683 37155780 98 - 0.842 0.657 -0.749
ENSG00000278540 E027 0.0000000       17 37161600 37161780 181 -      
ENSG00000278540 E028 14.9512118 0.0292422264 1.629118e-01 4.314716e-01 17 37161781 37162050 270 - 1.245 1.089 -0.555
ENSG00000278540 E029 9.5997807 0.0015646780 7.609110e-03 6.677347e-02 17 37179260 37179406 147 - 1.098 0.832 -0.993
ENSG00000278540 E030 9.9437742 0.0021092896 9.762078e-01 9.960045e-01 17 37181201 37181356 156 - 1.028 1.028 -0.002
ENSG00000278540 E031 3.5014287 0.0043556558 5.465042e-01 7.922365e-01 17 37188277 37188302 26 - 0.674 0.591 -0.360
ENSG00000278540 E032 8.0417500 0.0187364742 5.034181e-02 2.217161e-01 17 37188303 37188480 178 - 1.021 0.789 -0.880
ENSG00000278540 E033 9.1193078 0.0185270711 2.016784e-02 1.276981e-01 17 37191120 37191275 156 - 1.078 0.811 -1.004
ENSG00000278540 E034 9.3851514 0.0015285626 4.327148e-02 2.028473e-01 17 37192090 37192305 216 - 1.072 0.872 -0.744
ENSG00000278540 E035 4.4924726 0.0033171604 8.607281e-01 9.517388e-01 17 37193374 37193415 42 - 0.723 0.741 0.075
ENSG00000278540 E036 0.0000000       17 37193416 37193458 43 -      
ENSG00000278540 E037 4.6037802 0.0067385623 7.795734e-01 9.150275e-01 17 37200139 37200183 45 - 0.752 0.715 -0.152
ENSG00000278540 E038 1.5742584 0.2656173635 7.641454e-01 9.081970e-01 17 37200427 37200428 2 - 0.428 0.359 -0.380
ENSG00000278540 E039 2.7612414 0.0776156088 1.850050e-01 4.625587e-01 17 37200429 37200483 55 - 0.638 0.417 -1.057
ENSG00000278540 E040 4.6494285 0.0052620511 4.128542e-03 4.344061e-02 17 37205765 37205872 108 - 0.854 0.467 -1.668
ENSG00000278540 E041 5.2740438 0.0055655224 5.596828e-02 2.357723e-01 17 37206783 37206879 97 - 0.865 0.625 -0.974
ENSG00000278540 E042 3.9744197 0.0034691519 2.685871e-01 5.621083e-01 17 37207657 37207729 73 - 0.738 0.591 -0.623
ENSG00000278540 E043 4.0648272 0.0042270695 1.734336e-02 1.153260e-01 17 37207730 37207800 71 - 0.793 0.467 -1.431
ENSG00000278540 E044 1.9216426 0.0188774866 3.433317e-01 6.345218e-01 17 37210467 37210490 24 - 0.510 0.359 -0.793
ENSG00000278540 E045 0.0000000       17 37221518 37221723 206 -      
ENSG00000278540 E046 4.5501180 0.0034751250 4.221592e-02 2.000225e-01 17 37221724 37221842 119 - 0.818 0.553 -1.115
ENSG00000278540 E047 0.0000000       17 37221985 37222028 44 -      
ENSG00000278540 E048 3.8551759 0.0036830080 3.244723e-01 6.168865e-01 17 37223512 37223601 90 - 0.723 0.591 -0.562
ENSG00000278540 E049 6.2547701 0.0027483226 8.111927e-02 2.926103e-01 17 37224992 37225105 114 - 0.917 0.715 -0.793
ENSG00000278540 E050 0.0000000       17 37225400 37225571 172 -      
ENSG00000278540 E051 5.2405383 0.0032397838 1.833594e-04 3.896495e-03 17 37226339 37226452 114 - 0.917 0.417 -2.172
ENSG00000278540 E052 4.0552244 0.0034457768 5.132561e-03 5.058673e-02 17 37234975 37235099 125 - 0.806 0.417 -1.744
ENSG00000278540 E053 4.0800179 0.0045573096 1.110633e-01 3.498698e-01 17 37240476 37240564 89 - 0.766 0.553 -0.909
ENSG00000278540 E054 1.4579124 0.1090964463 7.830096e-01 9.165837e-01 17 37241953 37241960 8 - 0.362 0.417 0.306
ENSG00000278540 E055 2.1855154 0.0068835805 8.305106e-01 9.385990e-01 17 37241961 37242053 93 - 0.484 0.512 0.140
ENSG00000278540 E056 4.3411638 0.0042243596 2.772871e-01 5.706527e-01 17 37243371 37243559 189 - 0.766 0.625 -0.587
ENSG00000278540 E057 4.2061069 0.0476833883 2.543466e-01 5.460306e-01 17 37244588 37244718 131 - 0.766 0.591 -0.739
ENSG00000278540 E058 1.6929590 0.0086527228 9.572445e-01 9.898200e-01 17 37244719 37244734 16 - 0.427 0.417 -0.056
ENSG00000278540 E059 3.9507167 0.0040613941 6.123626e-02 2.485143e-01 17 37245080 37245214 135 - 0.766 0.512 -1.101
ENSG00000278540 E060 5.1104469 0.0027921096 4.771767e-05 1.282954e-03 17 37246826 37246976 151 - 0.917 0.359 -2.494
ENSG00000278540 E061 0.0000000       17 37247902 37248010 109 -      
ENSG00000278540 E062 3.2121549 0.0148466520 3.841932e-03 4.130996e-02 17 37248011 37248156 146 - 0.738 0.294 -2.208
ENSG00000278540 E063 2.1519581 0.1223640581 1.191231e-01 3.647751e-01 17 37248593 37248674 82 - 0.579 0.294 -1.531
ENSG00000278540 E064 0.0000000       17 37248675 37248676 2 -      
ENSG00000278540 E065 2.9938833 0.0691006647 1.329902e-01 3.872526e-01 17 37252005 37252108 104 - 0.674 0.417 -1.208
ENSG00000278540 E066 5.2845142 0.0029553188 1.087672e-01 3.461936e-01 17 37252886 37253036 151 - 0.854 0.657 -0.793
ENSG00000278540 E067 3.6988117 0.0043634040 1.339350e-02 9.717047e-02 17 37257703 37257866 164 - 0.766 0.417 -1.587
ENSG00000278540 E068 2.5060850 0.0068391858 2.510244e-02 1.457300e-01 17 37258212 37258373 162 - 0.638 0.294 -1.793
ENSG00000278540 E069 3.5532974 0.0040345426 1.441125e-04 3.199902e-03 17 37259360 37259530 171 - 0.793 0.216 -3.016
ENSG00000278540 E070 3.8568844 0.0038211473 3.251242e-01 6.176341e-01 17 37263685 37263894 210 - 0.723 0.591 -0.562
ENSG00000278540 E071 2.6416314 0.0053246640 1.706731e-01 4.429958e-01 17 37270751 37270861 111 - 0.619 0.417 -0.974
ENSG00000278540 E072 1.8091989 0.0170355847 4.327444e-01 7.101886e-01 17 37274193 37274216 24 - 0.484 0.359 -0.668
ENSG00000278540 E073 3.3767778 0.0088051806 3.901326e-01 6.756385e-01 17 37274217 37274299 83 - 0.674 0.553 -0.530
ENSG00000278540 E074 2.9022592 0.0049117446 7.542239e-01 9.032959e-01 17 37275951 37276049 99 - 0.600 0.553 -0.208
ENSG00000278540 E075 1.8420853 0.0084521394 1.893849e-01 4.680515e-01 17 37277033 37277114 82 - 0.362 0.553 0.984
ENSG00000278540 E076 2.2985833 0.1823370089 8.950896e-01 9.652908e-01 17 37277896 37277987 92 - 0.509 0.513 0.017
ENSG00000278540 E077 1.3102584 0.0126614711 1.918070e-01 4.715311e-01 17 37277988 37278005 18 - 0.427 0.216 -1.378
ENSG00000278540 E078 2.4010777 0.0058309217 2.800476e-01 5.732925e-01 17 37283267 37283405 139 - 0.579 0.417 -0.793
ENSG00000278540 E079 2.6777830 0.0053392503 6.684927e-01 8.619436e-01 17 37284838 37284970 133 - 0.534 0.591 0.261
ENSG00000278540 E080 0.5916865 0.0155652862 8.261237e-02 2.960949e-01 17 37289418 37289528 111 - 0.286 0.000 -15.399
ENSG00000278540 E081 0.1272623 0.0122817179 2.988802e-01   17 37299280 37299767 488 - 0.000 0.121 13.342
ENSG00000278540 E082 1.4509561 0.0087899221 8.246737e-01 9.363977e-01 17 37328645 37328961 317 - 0.396 0.359 -0.208
ENSG00000278540 E083 0.7282608 0.1511938680 9.094026e-01 9.712709e-01 17 37328962 37328986 25 - 0.242 0.216 -0.209
ENSG00000278540 E084 3.7324158 0.0038240606 2.115307e-01 4.965398e-01 17 37330173 37330335 163 - 0.723 0.553 -0.732
ENSG00000278540 E085 2.3945649 0.0224240602 1.261904e-01 3.766646e-01 17 37330336 37330425 90 - 0.599 0.359 -1.208
ENSG00000278540 E086 1.3242932 0.0098054458 5.233776e-01 7.766767e-01 17 37339804 37339850 47 - 0.396 0.294 -0.623
ENSG00000278540 E087 0.2448930 0.0161970055 6.647753e-01   17 37345253 37345382 130 - 0.074 0.121 0.792
ENSG00000278540 E088 1.5743846 0.0102558672 8.788606e-01 9.590124e-01 17 37358999 37359241 243 - 0.396 0.417 0.114
ENSG00000278540 E089 0.0000000       17 37360205 37360232 28 -      
ENSG00000278540 E090 0.1170040 0.0116407409 1.000000e+00   17 37360233 37360391 159 - 0.074 0.000 -13.318
ENSG00000278540 E091 0.1272623 0.0122817179 2.988802e-01   17 37365443 37365750 308 - 0.000 0.121 13.342
ENSG00000278540 E092 0.0000000       17 37366943 37367060 118 -      
ENSG00000278540 E093 0.3560444 0.0333586100 2.668502e-01   17 37367592 37367722 131 - 0.193 0.000 -14.716
ENSG00000278540 E094 0.0000000       17 37368699 37368727 29 -      
ENSG00000278540 E095 0.0000000       17 37369370 37369487 118 -      
ENSG00000278540 E096 2.4477792 0.0060511196 2.213579e-01 5.084849e-01 17 37406262 37406836 575 - 0.456 0.625 0.792

Help

Please Click HERE to learn more details about the results from DEXseq.