ENSG00000281103

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000629357 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.1956048 0.0000000 0.42328942 0.0000000 0.14574026 5.4372591 0.09630000 0.000000 0.190550 0.190550 0.05299973 0.02209382 FALSE FALSE
ENST00000629576 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.6731237 1.7050614 0.13954709 0.6139376 0.08104335 -3.5195885 0.09763333 0.183575 0.037250 -0.146325 0.66741103 0.02209382 FALSE FALSE
ENST00000661780 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.5501038 1.1692402 0.18682253 0.4068246 0.18682253 -2.5828903 0.10262500 0.144325 0.033675 -0.110650 0.76343902 0.02209382 FALSE FALSE
ENST00000668633 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.8686427 2.0417703 0.06570761 0.1301948 0.06570761 -4.7602870 0.18441667 0.237325 0.041025 -0.196300 0.11917330 0.02209382   FALSE
ENST00000685679 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.1472402 0.1721015 0.26961894 0.1721015 0.26961894 0.6187191 0.03908333 0.018025 0.099225 0.081200 0.85611524 0.02209382   FALSE
ENST00000687175 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.5361858 0.1629101 0.92427745 0.1629101 0.09054115 2.4338290 0.19780833 0.021550 0.362900 0.341350 0.02209382 0.02209382   FALSE
ENST00000690659 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.1693376 0.5080129 0.00000000 0.4033969 0.00000000 -5.6949161 0.02279167 0.068375 0.000000 -0.068375 0.84309472 0.02209382   FALSE
ENST00000700818 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.7042590 1.0858855 0.86065804 0.2358277 0.63951243 -0.3319189 0.12694167 0.121450 0.195800 0.074350 0.94484775 0.02209382   FALSE
ENST00000700835 ENSG00000281103 No_inf pgKDN_inf TRG-AS1 lncRNA lncRNA 4.700785 8.746461 3.0893 0.7551472 0.8538338 -1.498405 0.3299201 0.8634788 0.00000000 0.8634788 0.00000000 -6.4487009 0.04103333 0.082400 0.000000 -0.082400 1.00000000 0.02209382   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000281103 E001 0.1272623 0.012752032 1.000000000   7 38330978 38331023 46 + 0.000 0.059 9.291
ENSG00000281103 E002 0.0000000       7 38331024 38331048 25 +      
ENSG00000281103 E003 0.0000000       7 38331049 38331110 62 +      
ENSG00000281103 E004 0.0000000       7 38331111 38331116 6 +      
ENSG00000281103 E005 0.0000000       7 38331117 38331118 2 +      
ENSG00000281103 E006 0.1271363 0.012726526 1.000000000   7 38331119 38331146 28 + 0.000 0.059 10.802
ENSG00000281103 E007 0.2542726 0.018805596 1.000000000   7 38331147 38331396 250 + 0.000 0.110 11.606
ENSG00000281103 E008 0.1271363 0.012726526 1.000000000   7 38332792 38332873 82 + 0.000 0.059 10.802
ENSG00000281103 E009 0.3724111 0.019598615 0.679717230   7 38336717 38336826 110 + 0.151 0.110 -0.518
ENSG00000281103 E010 0.0000000       7 38341366 38341449 84 +      
ENSG00000281103 E011 0.0000000       7 38341450 38341464 15 +      
ENSG00000281103 E012 0.1271363 0.012726526 1.000000000   7 38341465 38341614 150 + 0.000 0.059 10.802
ENSG00000281103 E013 0.0000000       7 38341615 38341676 62 +      
ENSG00000281103 E014 0.0000000       7 38341677 38341700 24 +      
ENSG00000281103 E015 0.9798892 0.014714178 0.117830739 0.36256750 7 38341701 38341799 99 + 0.424 0.198 -1.518
ENSG00000281103 E016 3.4199727 0.006115976 0.002513665 0.03024136 7 38342256 38342840 585 + 0.151 0.678 3.183
ENSG00000281103 E017 1.8937976 0.008169454 0.068181261 0.26349156 7 38345632 38345972 341 + 0.151 0.481 2.290
ENSG00000281103 E018 0.2543986 0.016928831 1.000000000   7 38345973 38346020 48 + 0.000 0.110 11.606
ENSG00000281103 E019 2.1053639 0.007002446 0.307376435 0.60061663 7 38346021 38346127 107 + 0.542 0.413 -0.643
ENSG00000281103 E020 0.2533610 0.016878652 1.000000000   7 38350019 38350068 50 + 0.000 0.110 11.606
ENSG00000281103 E021 0.2533610 0.016878652 1.000000000   7 38350069 38350070 2 + 0.000 0.110 11.606
ENSG00000281103 E022 0.2533610 0.016878652 1.000000000   7 38350071 38350073 3 + 0.000 0.110 11.606
ENSG00000281103 E023 0.2533610 0.016878652 1.000000000   7 38350074 38350097 24 + 0.000 0.110 11.606
ENSG00000281103 E024 0.2533610 0.016878652 1.000000000   7 38350098 38350115 18 + 0.000 0.110 11.606
ENSG00000281103 E025 0.4968720 0.018083706 1.000000000   7 38350116 38350177 62 + 0.151 0.157 0.067
ENSG00000281103 E026 0.1186381 0.012288018 0.144030223   7 38350178 38350265 88 + 0.151 0.000 -13.399
ENSG00000281103 E027 0.0000000       7 38350266 38350297 32 +      
ENSG00000281103 E028 0.0000000       7 38350298 38350345 48 +      
ENSG00000281103 E029 1.0058599 0.031939804 0.418656074 0.69833552 7 38350346 38350450 105 + 0.150 0.304 1.290
ENSG00000281103 E030 10.5756982 0.001738923 0.351276599 0.64159816 7 38350451 38352968 2518 + 1.039 0.992 -0.172
ENSG00000281103 E031 0.4877773 0.019092356 0.266894040   7 38359452 38359499 48 + 0.262 0.110 -1.518
ENSG00000281103 E032 0.6056601 0.018993764 0.091865987 0.31480355 7 38359500 38359606 107 + 0.351 0.110 -2.103
ENSG00000281103 E033 0.0000000       7 38359607 38359707 101 +      
ENSG00000281103 E034 0.3812526 0.016823879 0.585320240   7 38373365 38373589 225 + 0.000 0.157 12.051
ENSG00000281103 E035 17.1885664 0.001442998 0.397262096 0.68147512 7 38375557 38378804 3248 + 1.213 1.193 -0.069

Help

Please Click HERE to learn more details about the results from DEXseq.