ENSG00000291093

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000427063 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA lncRNA 34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 2.5391707 1.0831906 3.6150209 0.6514065 1.21062708 1.7294443 0.25630833 0.063150 0.408425 0.345275 0.23836037 0.01147956 FALSE TRUE
ENST00000438202 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA lncRNA 34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 0.8782766 0.0000000 1.3938821 0.0000000 0.50206537 7.1332779 0.07840000 0.000000 0.157125 0.157125 0.01147956 0.01147956   FALSE
ENST00000455774 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA lncRNA 34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 0.3013889 0.7146219 0.0000000 0.2503462 0.00000000 -6.1791566 0.02782500 0.067075 0.000000 -0.067075 0.52689994 0.01147956   FALSE
ENST00000623175 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA lncRNA 34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 2.5649031 2.4812257 2.1317582 0.8943198 1.09599997 -0.2180601 0.21345833 0.246025 0.232825 -0.013200 1.00000000 0.01147956 FALSE TRUE
ENST00000686070 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA lncRNA 34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 0.8301447 1.2196783 0.4253314 0.2434361 0.07575585 -1.4980949 0.06479167 0.086550 0.047050 -0.039500 1.00000000 0.01147956   FALSE
ENST00000686207 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA lncRNA 34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 0.5267707 0.4451215 0.8257310 0.2867490 0.32904237 0.8767870 0.04685000 0.021275 0.092250 0.070975 0.44952171 0.01147956   FALSE
MSTRG.3251.21 ENSG00000291093 No_inf pgKDN_inf SVIL-AS1 lncRNA   34.94957 49.92266 8.956502 32.05795 0.179553 -2.477367 26.3172198 43.1325362 0.0000000 32.5262916 0.00000000 -12.0748953 0.22813333 0.449700 0.000000 -0.449700 0.79571629 0.01147956   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000291093 E001 0.0000000       10 29409402 29409503 102 +      
ENSG00000291093 E002 0.0000000       10 29409504 29409533 30 +      
ENSG00000291093 E003 0.0000000       10 29409534 29409553 20 +      
ENSG00000291093 E004 0.0000000       10 29409554 29409556 3 +      
ENSG00000291093 E005 0.0000000       10 29409557 29409559 3 +      
ENSG00000291093 E006 0.2441403 0.0165959273 0.9490034187   10 29409560 29409579 20 + 0.090 0.100 0.178
ENSG00000291093 E007 0.8520950 0.0139522263 0.7887638794 0.918926809 10 29409580 29409601 22 + 0.283 0.251 -0.237
ENSG00000291093 E008 1.4417016 0.0099920679 0.1035259199 0.336287342 10 29409602 29409615 14 + 0.487 0.251 -1.407
ENSG00000291093 E009 1.5689639 0.0091349592 0.2097552922 0.494208360 10 29409616 29409617 2 + 0.487 0.310 -0.992
ENSG00000291093 E010 2.3119848 0.0073301156 0.6144041622 0.832490242 10 29409618 29409658 41 + 0.548 0.489 -0.281
ENSG00000291093 E011 0.8520273 0.0146846478 0.7948076432 0.921894136 10 29409659 29409683 25 + 0.283 0.251 -0.237
ENSG00000291093 E012 0.3804973 0.0166257839 0.0875532598   10 29410243 29410461 219 + 0.000 0.251 12.546
ENSG00000291093 E013 3.2909948 0.0081225866 0.7245726555 0.889402216 10 29415357 29415412 56 + 0.649 0.615 -0.144
ENSG00000291093 E014 0.0000000       10 29418182 29418304 123 +      
ENSG00000291093 E015 5.2104976 0.0027122999 0.0738149930 0.276717720 10 29420491 29420661 171 + 0.872 0.691 -0.723
ENSG00000291093 E016 24.1512019 0.0007188509 0.1982500901 0.479674324 10 29420662 29422374 1713 + 1.420 1.379 -0.144
ENSG00000291093 E017 0.0000000       10 29457651 29457696 46 +      
ENSG00000291093 E018 0.0000000       10 29458274 29458520 247 +      
ENSG00000291093 E019 0.7186331 0.1692724262 0.1648846627 0.434371582 10 29458521 29458787 267 + 0.333 0.100 -2.144
ENSG00000291093 E020 3.2540616 0.0141250450 0.0005882676 0.009908689 10 29460385 29461146 762 + 0.333 0.811 2.248
ENSG00000291093 E021 6.2808142 0.0319774324 0.2389995751 0.527931010 10 29467240 29468919 1680 + 0.783 0.932 0.576
ENSG00000291093 E022 0.3709943 0.0172720631 0.5338457351   10 29468920 29469130 211 + 0.090 0.182 1.178
ENSG00000291093 E023 3.3498520 0.0050997268 0.0461113047 0.210617133 10 29482833 29485879 3047 + 0.487 0.755 1.178
ENSG00000291093 E024 0.1176306 0.0118491958 0.5838982008   10 29487155 29488960 1806 + 0.090 0.000 -11.676
ENSG00000291093 E025 0.2537694 0.0169473417 0.2142144846   10 29492963 29493891 929 + 0.000 0.182 12.057
ENSG00000291093 E026 0.2537079 0.2308334443 0.2624405980   10 29510428 29512266 1839 + 0.000 0.182 11.878

Help

Please Click HERE to learn more details about the results from DEXseq.