ENSG00000102879

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000219150 ENSG00000102879 pgwt_inf pgKDN_inf CORO1A protein_coding protein_coding 702.0198 837.364 772.0877 7.093691 14.45228 -0.1170887 602.7383 708.7603 711.9279 6.523384 5.795905 0.006433223 0.8501333 0.846425 0.922725 0.0763 2.49734e-05 2.957749e-21 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf pgwt.inf log2fold_pgwt.inf_pgKDN.inf
ENSG00000102879 E001 0.1177332 1.169702e-02 6.228003e-01   16 30182827 30182986 160 + 0.000 0.089 9.886
ENSG00000102879 E002 0.0000000       16 30182987 30183013 27 +      
ENSG00000102879 E003 0.1176775 1.170042e-02 6.227694e-01   16 30183014 30183133 120 + 0.000 0.089 11.207
ENSG00000102879 E004 0.0000000       16 30183514 30183601 88 +      
ENSG00000102879 E005 0.0000000       16 30183602 30183604 3 +      
ENSG00000102879 E006 0.0000000       16 30183605 30183608 4 +      
ENSG00000102879 E007 0.0000000       16 30183609 30183616 8 +      
ENSG00000102879 E008 0.0000000       16 30183617 30183618 2 +      
ENSG00000102879 E009 0.0000000       16 30183619 30183620 2 +      
ENSG00000102879 E010 0.0000000       16 30183621 30183633 13 +      
ENSG00000102879 E011 0.0000000       16 30183634 30183725 92 +      
ENSG00000102879 E012 4.2228458 3.996626e-03 1.360362e-02 3.883908e-01 16 30183825 30183961 137 + 0.530 0.842 1.317
ENSG00000102879 E013 0.0000000       16 30184218 30184225 8 +      
ENSG00000102879 E014 0.0000000       16 30184226 30184343 118 +      
ENSG00000102879 E015 0.1176775 1.170042e-02 6.227694e-01   16 30184352 30184421 70 + 0.000 0.089 11.207
ENSG00000102879 E016 4.5989463 1.080097e-02 3.716313e-02 5.471583e-01 16 30184748 30184964 217 + 0.593 0.856 1.082
ENSG00000102879 E017 660.7397477 3.675953e-05 1.609062e-01 7.803337e-01 16 30185209 30185407 199 + 2.829 2.813 -0.054
ENSG00000102879 E018 57.2954739 2.045200e-03 3.337640e-04 5.812188e-02 16 30185408 30185857 450 + 1.676 1.836 0.540
ENSG00000102879 E019 15.3609812 9.477785e-04 4.399873e-02 5.726363e-01 16 30185858 30185931 74 + 1.129 1.280 0.536
ENSG00000102879 E020 121.8148137 1.207207e-04 2.124855e-12 7.729585e-09 16 30185932 30186413 482 + 1.976 2.174 0.663
ENSG00000102879 E021 43.6525299 3.270612e-04 7.997914e-04 9.668449e-02 16 30186414 30186597 184 + 1.563 1.718 0.528
ENSG00000102879 E022 498.8465765 4.154924e-05 3.628479e-01 8.953385e-01 16 30186598 30186681 84 + 2.705 2.693 -0.040
ENSG00000102879 E023 294.7508735 6.119289e-05 2.243174e-01 8.296877e-01 16 30186682 30186720 39 + 2.482 2.460 -0.071
ENSG00000102879 E024 6.6071260 7.550003e-03 4.332596e-01 9.155328e-01 16 30186721 30186815 95 + 0.835 0.920 0.327
ENSG00000102879 E025 583.3467419 1.119342e-04 1.485809e-02 3.989259e-01 16 30186816 30186945 130 + 2.782 2.751 -0.104
ENSG00000102879 E026 21.8953566 6.438606e-04 2.410525e-03 1.691430e-01 16 30186946 30187038 93 + 1.248 1.443 0.680
ENSG00000102879 E027 887.6767091 3.678985e-05 7.555230e-02 6.576551e-01 16 30187039 30187223 185 + 2.957 2.940 -0.058
ENSG00000102879 E028 750.3615353 2.962667e-05 9.651401e-01 9.970506e-01 16 30187382 30187501 120 + 2.875 2.876 0.002
ENSG00000102879 E029 20.8655866 2.339207e-03 2.560694e-04 4.911663e-02 16 30187502 30187724 223 + 1.193 1.443 0.875
ENSG00000102879 E030 769.1533323 3.013154e-05 4.820741e-01 9.227557e-01 16 30187725 30187829 105 + 2.890 2.883 -0.025
ENSG00000102879 E031 8.8602258 8.854353e-03 7.155445e-01 9.677945e-01 16 30187830 30187941 112 + 1.012 0.976 -0.133
ENSG00000102879 E032 809.4701270 2.954510e-05 2.351280e-01 8.353312e-01 16 30187942 30188074 133 + 2.915 2.903 -0.041
ENSG00000102879 E033 399.8556413 5.950617e-05 8.015696e-01 9.797686e-01 16 30188075 30188087 13 + 2.601 2.605 0.013
ENSG00000102879 E034 17.0316981 8.524334e-04 7.510729e-03 3.089567e-01 16 30188088 30188191 104 + 1.146 1.339 0.680
ENSG00000102879 E035 618.4693544 1.021674e-04 9.645523e-01 9.970087e-01 16 30188192 30188249 58 + 2.792 2.792 -0.002
ENSG00000102879 E036 8.6549571 6.679575e-03 1.187071e-01 7.286300e-01 16 30188250 30188360 111 + 0.897 1.053 0.578
ENSG00000102879 E037 1112.0260621 2.914432e-05 2.954084e-01 8.709530e-01 16 30188361 30188576 216 + 3.042 3.051 0.031
ENSG00000102879 E038 1.0932420 1.118327e-02 4.346936e-01   16 30188577 30188859 283 + 0.254 0.375 0.786
ENSG00000102879 E039 119.8785410 4.816765e-04 8.099043e-01 9.811007e-01 16 30188860 30189076 217 + 2.079 2.086 0.024

Help

Please Click HERE to learn more details about the results from DEXseq.