ENSG00000162191

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000301935 ENSG00000162191 pgwt_inf pgKDN_inf UBXN1 protein_coding protein_coding 101.2791 102.995 95.62799 6.928617 6.314552 -0.1070587 45.831146 41.679743 51.605939 1.811763 4.071012 0.3081242 0.46155000 0.41285 0.542225 0.129375 0.7195532 0.0198417 FALSE TRUE
ENST00000525004 ENSG00000162191 pgwt_inf pgKDN_inf UBXN1 protein_coding protein_coding_CDS_not_defined 101.2791 102.995 95.62799 6.928617 6.314552 -0.1070587 3.844914 11.534742 0.000000 4.491655 0.000000 -10.1730202 0.03646667 0.10940 0.000000 -0.109400 0.0198417 0.0198417 FALSE TRUE
ENST00000533000 ENSG00000162191 pgwt_inf pgKDN_inf UBXN1 protein_coding protein_coding 101.2791 102.995 95.62799 6.928617 6.314552 -0.1070587 34.249757 34.924937 30.624488 5.443221 4.686672 -0.1895138 0.33279167 0.33580 0.314250 -0.021550 0.9546850 0.0198417 FALSE FALSE
ENST00000534176 ENSG00000162191 pgwt_inf pgKDN_inf UBXN1 protein_coding protein_coding 101.2791 102.995 95.62799 6.928617 6.314552 -0.1070587 5.182196 1.142974 6.468911 1.142974 2.354280 2.4903918 0.05078333 0.00945 0.068725 0.059275 0.1839049 0.0198417 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf pgwt.inf log2fold_pgwt.inf_pgKDN.inf
ENSG00000162191 E001 0.0000000       11 62676498 62676498 1 -      
ENSG00000162191 E002 0.0000000       11 62676499 62676499 1 -      
ENSG00000162191 E003 0.0000000       11 62676500 62676500 1 -      
ENSG00000162191 E004 0.1177530 0.0116753599 0.5568806311   11 62676501 62676503 3 - 0.000 0.094 9.027
ENSG00000162191 E005 0.3733767 0.1936248180 0.6095733866   11 62676504 62676508 5 - 0.176 0.094 -1.047
ENSG00000162191 E006 2.3377434 0.0067779975 0.8799259512   11 62676509 62676516 8 - 0.512 0.534 0.104
ENSG00000162191 E007 18.0589801 0.0468826295 0.4793051608 0.92188885 11 62676517 62676612 96 - 1.313 1.242 -0.246
ENSG00000162191 E008 15.8144816 0.0203310690 0.6609540506 0.95552952 11 62676613 62676639 27 - 1.244 1.205 -0.139
ENSG00000162191 E009 1.9840760 0.0084355295 0.5748750518   11 62676640 62676812 173 - 0.512 0.431 -0.411
ENSG00000162191 E010 28.9061018 0.0007204983 0.4334483199 0.91553276 11 62676813 62676896 84 - 1.496 1.453 -0.147
ENSG00000162191 E011 18.7716048 0.0008227686 0.4872887580 0.92316120 11 62676897 62676902 6 - 1.318 1.271 -0.162
ENSG00000162191 E012 50.3199924 0.0015640220 0.6351287847 0.95006682 11 62676903 62676979 77 - 1.700 1.721 0.072
ENSG00000162191 E013 32.0739109 0.0149436704 0.5467646953 0.93562298 11 62676980 62676980 1 - 1.499 1.540 0.141
ENSG00000162191 E014 38.2399737 0.0037999141 0.5480459738 0.93639378 11 62676981 62677005 25 - 1.578 1.610 0.110
ENSG00000162191 E015 6.8037406 0.0025678266 0.4284912443 0.91318917 11 62677006 62677517 512 - 0.930 0.849 -0.311
ENSG00000162191 E016 32.9063640 0.0017044530 0.7395528957 0.96974549 11 62677518 62677537 20 - 1.539 1.521 -0.059
ENSG00000162191 E017 36.5063915 0.0003998646 0.5937610521 0.94375317 11 62677538 62677563 26 - 1.586 1.561 -0.087
ENSG00000162191 E018 35.3618260 0.0004602907 0.9969014516 0.99942908 11 62677564 62677585 22 - 1.560 1.561 0.002
ENSG00000162191 E019 55.9459923 0.0007431871 0.9321613169 0.99502329 11 62677586 62677634 49 - 1.757 1.754 -0.010
ENSG00000162191 E020 6.2925556 0.0024194898 0.0032605380 0.20164320 11 62677635 62677739 105 - 0.677 0.998 1.254
ENSG00000162191 E021 4.2316999 0.0034270650 0.0144012574 0.39536729 11 62677740 62677780 41 - 0.545 0.849 1.274
ENSG00000162191 E022 55.4305489 0.0002845953 0.9142026203 0.99324607 11 62677781 62677804 24 - 1.749 1.754 0.016
ENSG00000162191 E023 57.1715117 0.0002499116 0.8498138349 0.98537050 11 62677805 62677832 28 - 1.768 1.761 -0.023
ENSG00000162191 E024 0.3648463 0.0167851104 0.6051061352   11 62677833 62677917 85 - 0.097 0.172 0.952
ENSG00000162191 E025 0.2354862 0.0157447976 0.2543258243   11 62677918 62677926 9 - 0.000 0.172 12.347
ENSG00000162191 E026 51.7088741 0.0002796377 0.8132237600 0.98131371 11 62677927 62677938 12 - 1.717 1.727 0.034
ENSG00000162191 E027 109.2457359 0.0001645233 0.1070293469 0.71386957 11 62677939 62678088 150 - 2.020 2.065 0.150
ENSG00000162191 E028 41.8566491 0.0033407580 0.2163097123 0.82399597 11 62678089 62678118 30 - 1.600 1.663 0.215
ENSG00000162191 E029 0.9639638 0.0117834826 0.1662899628   11 62678119 62678208 90 - 0.176 0.390 1.537
ENSG00000162191 E030 0.7523371 0.1438841222 0.4523573284   11 62678209 62678338 130 - 0.302 0.172 -1.049
ENSG00000162191 E031 44.7847645 0.0041353554 0.6509058544 0.95387362 11 62678339 62678408 70 - 1.649 1.672 0.079
ENSG00000162191 E032 0.3753504 0.0168015997 0.5620909956   11 62678409 62678443 35 - 0.176 0.094 -1.048
ENSG00000162191 E033 0.1293535 0.0124005706 0.5200441723   11 62678444 62678494 51 - 0.097 0.000 -11.973
ENSG00000162191 E034 42.9506688 0.0030211499 0.4907148292 0.92359823 11 62678495 62678601 107 - 1.659 1.625 -0.115
ENSG00000162191 E035 26.4688137 0.0098154683 0.8784816302 0.98957970 11 62678690 62678743 54 - 1.432 1.445 0.046
ENSG00000162191 E036 0.6007772 0.0153183867 0.1851468382   11 62678744 62678864 121 - 0.097 0.294 1.952
ENSG00000162191 E037 27.4294334 0.0005463551 0.2874704761 0.86792138 11 62678865 62678952 88 - 1.481 1.422 -0.204
ENSG00000162191 E038 27.0230164 0.0006171235 0.0221862004 0.45905179 11 62678953 62679038 86 - 1.506 1.376 -0.448
ENSG00000162191 E039 13.3656315 0.0011017803 0.0007483072 0.09266609 11 62679039 62679117 79 - 1.268 0.998 -0.968

Help

Please Click HERE to learn more details about the results from DEXseq.