ENSG00000248323

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000648457 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA lncRNA 26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 2.440893 3.938949 2.861504 1.7970267 0.7349248 -0.4596621 0.08343333 0.097950 0.099725 0.001775 0.90889532 0.01172138 FALSE  
ENST00000649424 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA lncRNA 26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 1.046905 3.026981 0.000000 1.3761051 0.0000000 -8.2464940 0.02546667 0.063575 0.000000 -0.063575 0.01172138 0.01172138    
ENST00000650047 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA lncRNA 26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 4.223153 6.846416 4.892018 1.0889660 0.8060289 -0.4840789 0.13653333 0.157400 0.173300 0.015900 0.99686091 0.01172138    
MSTRG.23212.23 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA   26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 3.529506 6.014494 3.210494 0.3050009 0.1829098 -0.9035581 0.14161667 0.140600 0.114500 -0.026100 0.88710990 0.01172138    
MSTRG.23212.49 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA   26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 2.090797 1.408156 4.544217 1.4081555 1.9843571 1.6831872 0.06729167 0.025275 0.149475 0.124200 0.57760866 0.01172138    
MSTRG.23212.5 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA   26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 1.178263 3.534789 0.000000 3.5347893 0.0000000 -8.4695561 0.02115000 0.063450 0.000000 -0.063450 0.90861023 0.01172138    
MSTRG.23212.51 ENSG00000248323 pgwt_inf pgKDN_inf LUCAT1 lncRNA   26.81272 43.38925 28.49359 4.213819 2.014921 -0.6065264 4.808972 8.678407 3.989224 1.6864675 1.7145926 -1.1193717 0.20091667 0.214825 0.149350 -0.065475 0.88698240 0.01172138 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf pgwt.inf log2fold_pgwt.inf_pgKDN.inf
ENSG00000248323 E001 0.1177530 0.0116934052 0.8352266870   5 91054834 91056854 2021 - 0.000 0.079 9.404
ENSG00000248323 E002 0.0000000       5 91151211 91151237 27 -      
ENSG00000248323 E003 0.4824810 0.0270761107 0.5662909055   5 91151238 91151897 660 - 0.115 0.204 0.978
ENSG00000248323 E004 0.3642012 0.0168746541 0.8846269522   5 91151898 91152022 125 - 0.115 0.146 0.393
ENSG00000248323 E005 0.5886301 0.0285585988 0.0630159875   5 91152023 91152188 166 - 0.000 0.301 14.066
ENSG00000248323 E006 0.0000000       5 91181388 91181395 8 -      
ENSG00000248323 E007 0.1176775 0.0117747636 0.8351713821   5 91181396 91181637 242 - 0.000 0.079 11.986
ENSG00000248323 E008 0.5890814 0.0282254533 0.0630134548   5 91195496 91195592 97 - 0.000 0.301 14.067
ENSG00000248323 E009 0.1182043 0.0117172533 0.8352553629   5 91202611 91202700 90 - 0.000 0.079 11.987
ENSG00000248323 E010 0.0000000       5 91203382 91203446 65 -      
ENSG00000248323 E011 0.6123484 0.0145372526 0.9864956235   5 91207633 91207788 156 - 0.206 0.204 -0.022
ENSG00000248323 E012 1.0704926 0.1207888197 0.0909825862   5 91218365 91220290 1926 - 0.115 0.414 2.393
ENSG00000248323 E013 0.3536150 0.0158921215 0.2139353154   5 91220739 91221285 547 - 0.000 0.204 13.445
ENSG00000248323 E014 0.1293601 0.0123842933 0.3474262074   5 91231286 91231711 426 - 0.115 0.000 -13.578
ENSG00000248323 E015 0.2454893 0.0165356095 0.7431371785   5 91242941 91243002 62 - 0.115 0.079 -0.607
ENSG00000248323 E016 0.1278119 0.0123023163 0.3473786564   5 91244820 91244964 145 - 0.115 0.000 -13.579
ENSG00000248323 E017 0.1177530 0.0116934052 0.8352266870   5 91244965 91245010 46 - 0.000 0.079 11.987
ENSG00000248323 E018 0.2364085 0.2689676853 0.4931724188   5 91264663 91264713 51 - 0.000 0.146 12.495
ENSG00000248323 E019 2.4220390 0.0056770928 0.3769029243   5 91283911 91285159 1249 - 0.451 0.579 0.616
ENSG00000248323 E020 0.1293601 0.0123842933 0.3474262074   5 91285160 91285184 25 - 0.115 0.000 -13.578
ENSG00000248323 E021 4.3626647 0.0107988673 0.2768384392 0.86132234 5 91285185 91286181 997 - 0.638 0.777 0.578
ENSG00000248323 E022 0.5891965 0.0343906073 0.0638563084   5 91286182 91286415 234 - 0.000 0.301 14.053
ENSG00000248323 E023 0.3531637 0.0159129899 0.2138726513   5 91286416 91286436 21 - 0.000 0.204 13.445
ENSG00000248323 E024 0.6234778 0.0182906796 0.3642872907   5 91286437 91286606 170 - 0.281 0.146 -1.192
ENSG00000248323 E025 0.7402722 0.0146254524 0.6098171353   5 91301904 91301910 7 - 0.281 0.204 -0.607
ENSG00000248323 E026 1.7148846 0.0084966438 0.8058902994   5 91301911 91302077 167 - 0.451 0.414 -0.192
ENSG00000248323 E027 7.9605708 0.0049250284 0.5818124017 0.94173146 5 91302078 91302666 589 - 0.978 0.924 -0.205
ENSG00000248323 E028 1.2241956 0.2044469159 0.9715785117   5 91302667 91302730 64 - 0.346 0.342 -0.022
ENSG00000248323 E029 0.9654753 0.0844458482 0.4332370056   5 91302731 91302731 1 - 0.206 0.342 0.979
ENSG00000248323 E030 0.9654753 0.0844458482 0.4332370056   5 91302732 91302732 1 - 0.206 0.342 0.979
ENSG00000248323 E031 0.9654753 0.0844458482 0.4332370056   5 91302733 91302735 3 - 0.206 0.342 0.979
ENSG00000248323 E032 1.0948288 0.0574315383 0.7250238437   5 91302736 91302736 1 - 0.281 0.342 0.393
ENSG00000248323 E033 2.9369424 0.0065006763 0.8370638766   5 91302737 91302795 59 - 0.606 0.579 -0.121
ENSG00000248323 E034 9.2342466 0.0036484259 0.3464905000 0.88963964 5 91302796 91302967 172 - 0.950 1.041 0.337
ENSG00000248323 E035 7.1935298 0.0034566706 0.7214791770 0.96814392 5 91302968 91303028 61 - 0.886 0.924 0.143
ENSG00000248323 E036 12.0799303 0.0127667099 0.8501967424 0.98554103 5 91303029 91303161 133 - 1.099 1.120 0.076
ENSG00000248323 E037 5.0032916 0.0067278404 0.9391968006 0.99581299 5 91303331 91303431 101 - 0.768 0.777 0.037
ENSG00000248323 E038 1.0817761 0.1672362221 0.3961732003   5 91303869 91303872 4 - 0.206 0.380 1.200
ENSG00000248323 E039 7.6910226 0.0311377269 0.8260209818 0.98287690 5 91303873 91303971 99 - 0.919 0.944 0.093
ENSG00000248323 E040 42.8779329 0.0003803228 0.0001944864 0.03997081 5 91303972 91305522 1551 - 1.525 1.702 0.600
ENSG00000248323 E041 4.7491341 0.0031353074 0.6371112915 0.95045605 5 91305523 91305679 157 - 0.721 0.777 0.230
ENSG00000248323 E042 4.8763850 0.0051729211 0.7887193301 0.97770868 5 91305680 91305771 92 - 0.745 0.777 0.130
ENSG00000248323 E043 8.2515953 0.0026466351 0.2227522227 0.82873088 5 91305772 91306031 260 - 0.886 1.008 0.457
ENSG00000248323 E044 1.9718863 0.0230352969 0.4195178474   5 91306032 91306096 65 - 0.536 0.414 -0.607
ENSG00000248323 E045 9.8284631 0.0015482129 0.1649560079 0.78483152 5 91306097 91306484 388 - 0.950 1.078 0.474
ENSG00000248323 E046 3.3836570 0.0174944257 0.2498117159   5 91306485 91306554 70 - 0.535 0.698 0.715
ENSG00000248323 E047 9.9947656 0.0074452002 0.7604304768 0.97302585 5 91306555 91306837 283 - 1.018 1.048 0.112
ENSG00000248323 E048 13.2124270 0.0052387839 0.6700467102 0.95670817 5 91306838 91307351 514 - 1.167 1.133 -0.121
ENSG00000248323 E049 8.6582371 0.0019105665 0.7866286909 0.97707420 5 91307352 91307617 266 - 0.964 0.990 0.098
ENSG00000248323 E050 4.6951589 0.0031489122 0.1085393100 0.71422330 5 91307618 91307678 61 - 0.850 0.662 -0.759
ENSG00000248323 E051 20.4349962 0.0007318113 0.2312870672 0.83366405 5 91307679 91307865 187 - 1.277 1.357 0.279
ENSG00000248323 E052 78.2337649 0.0002093693 0.6207308470 0.94824873 5 91307866 91308388 523 - 1.883 1.900 0.057
ENSG00000248323 E053 48.1376737 0.0003209382 0.2333901250 0.83488705 5 91308389 91308787 399 - 1.714 1.664 -0.170
ENSG00000248323 E054 13.2687562 0.0010921491 0.1600027995 0.77852332 5 91308788 91308906 119 - 1.209 1.100 -0.393
ENSG00000248323 E055 78.5700851 0.0039640936 0.1188631242 0.72885084 5 91308907 91309712 806 - 1.930 1.867 -0.213
ENSG00000248323 E056 47.2969295 0.0003612544 0.0427443468 0.56725686 5 91309713 91310333 621 - 1.624 1.713 0.305
ENSG00000248323 E057 20.0345840 0.0007422607 0.0689946674 0.64316611 5 91310334 91310601 268 - 1.382 1.264 -0.412
ENSG00000248323 E058 3.9220750 0.0036363278 0.6374856311 0.95048385 5 91310602 91310613 12 - 0.721 0.662 -0.244
ENSG00000248323 E059 3.6766055 0.0037974768 0.6813789736   5 91310614 91310626 13 - 0.695 0.643 -0.220
ENSG00000248323 E060 3.9104320 0.0039233465 0.9083221327 0.99229372 5 91310627 91310640 14 - 0.695 0.681 -0.059
ENSG00000248323 E061 7.7351010 0.0424822360 0.4664378771 0.91977084 5 91310641 91310737 97 - 0.992 0.891 -0.377
ENSG00000248323 E062 3.7714836 0.0041882875 0.6407991221 0.95056070 5 91310738 91310743 6 - 0.638 0.698 0.256
ENSG00000248323 E063 9.0786285 0.0015832070 0.3861669595 0.90055123 5 91310744 91310855 112 - 1.043 0.963 -0.294
ENSG00000248323 E064 21.3185038 0.0189997371 0.6508461959 0.95387362 5 91310856 91311032 177 - 1.365 1.326 -0.139
ENSG00000248323 E065 19.3865061 0.0255809807 0.0811069769 0.66995406 5 91311033 91311549 517 - 1.193 1.368 0.616
ENSG00000248323 E066 5.5390708 0.0315112988 0.4036693179 0.90403736 5 91311550 91311645 96 - 0.868 0.763 -0.414
ENSG00000248323 E067 4.7411584 0.0137659903 0.4423042738 0.91689588 5 91311646 91311737 92 - 0.695 0.792 0.393
ENSG00000248323 E068 12.1296561 0.0013364151 0.1174996346 0.72667192 5 91311738 91312013 276 - 1.030 1.164 0.481
ENSG00000248323 E069 12.1442651 0.0020133077 0.1778849562 0.79548264 5 91312014 91312294 281 - 1.043 1.158 0.415
ENSG00000248323 E070 9.5868343 0.0098531818 0.2722958879 0.85812246 5 91312295 91312413 119 - 1.077 0.972 -0.384
ENSG00000248323 E071 5.6487845 0.0028718628 0.4099795931 0.90706738 5 91312414 91312481 68 - 0.868 0.777 -0.355
ENSG00000248323 E072 3.9532439 0.0045159646 0.1284552570 0.74218820 5 91312482 91312495 14 - 0.790 0.601 -0.787
ENSG00000248323 E073 8.1512563 0.0086567472 0.0672317070 0.63755275 5 91312496 91312768 273 - 1.054 0.868 -0.694
ENSG00000248323 E074 5.8873508 0.0499937437 0.6805900446 0.95943461 5 91312769 91313050 282 - 0.868 0.805 -0.245
ENSG00000248323 E075 0.9650410 0.0124429285 0.3883089441   5 91313051 91313056 6 - 0.206 0.342 0.978
ENSG00000248323 E076 1.2121344 0.0174727180 0.5346222742   5 91313057 91313077 21 - 0.281 0.380 0.615
ENSG00000248323 E077 17.7125377 0.0035526699 0.9502275638 0.99613350 5 91313078 91313229 152 - 1.263 1.269 0.020
ENSG00000248323 E078 6.7791499 0.0023026425 0.1586828201 0.77797235 5 91313638 91313694 57 - 0.964 0.819 -0.554
ENSG00000248323 E079 6.3003830 0.0025373451 0.0569978774 0.61084808 5 91313695 91313777 83 - 0.964 0.763 -0.777
ENSG00000248323 E080 0.4925958 0.0159493268 0.6766162554   5 91313778 91313781 4 - 0.206 0.146 -0.607
ENSG00000248323 E081 1.1161492 0.0140845603 0.3429523850   5 91313962 91314033 72 - 0.401 0.255 -0.929
ENSG00000248323 E082 0.7396892 0.0135836098 0.6104057932   5 91314034 91314052 19 - 0.281 0.204 -0.607
ENSG00000248323 E083 0.7513652 0.0137762784 0.1855103192   5 91314053 91314079 27 - 0.346 0.146 -1.607
ENSG00000248323 E084 4.8317084 0.0287235593 0.0572054878 0.61084808 5 91314080 91314091 12 - 0.886 0.643 -0.979
ENSG00000248323 E085 10.3278259 0.0233858701 0.2065378726 0.81660059 5 91314092 91314164 73 - 1.119 0.990 -0.469
ENSG00000248323 E086 12.8584271 0.0073608735 0.5243112296 0.93150282 5 91314165 91314244 80 - 1.167 1.113 -0.192
ENSG00000248323 E087 4.7921528 0.0029893067 0.4113436077 0.90706738 5 91314245 91314247 3 - 0.811 0.715 -0.384
ENSG00000248323 E088 11.4263411 0.0273148111 0.4321826857 0.91526790 5 91314248 91314331 84 - 1.139 1.048 -0.327
ENSG00000248323 E089 10.9182897 0.0014731563 0.4228761187 0.91105042 5 91314332 91314547 216 - 1.109 1.041 -0.248

Help

Please Click HERE to learn more details about the results from DEXseq.